Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00311 ATGCATTTGAAGATGTGGGCATTACATTTTGTCTCCGTGCACCATAAAACTGAACCTTATGACAAAATATTGGTGTCTGTATCAGGGCTAAAGTCAAATCCTTTAGAATGCTTTATGGACATTGTTGAAACAAACTGCTTTAATTATAAGCTTGACACTAATGGCCGACTGAAATTCCTGCAACACAACCCAAAGATTGGTGAAAGGTGTAAACAGTCATCTAGGCTCCAGCGTTTGCTTACTCTCCTTGACACTGGGTCAACCCAAGCTACAAGGTTGACTGCTGCTCGTCAGATAGGGGACATTGCAAAATCACACCCTCAAGACTTGACCAGTCTTCTCAAAAAGGTTTCTCAATATCTCCGCAGTAAAAATTGGGATACACGAGTTGCAGCTGCTCATGCAATTGGATCAATTGCTGAGAATGTTAAGCACATAAGTTTGGCTGAACTTTTTGCTTCTATTGTATCCAAAATGTCTGAGAATGGGATAACTTGTAGCATTGAGGACCTGTGTTCATGGCCATATTTACAATCAAAATTTACAGGAAGCTCATTTAGAAGCTTTGATATGAACAAGGTGCTTGAATTTGGTGCCTTACTAGCATCGGGAGGACAGGAATATGATATTGGAAATGATAACATAAAGAACCCAAAGGAGCGATTGGTTCGTCAAAAGCAAAATCTTCGACGTCGTTTAGGTTTGGATGTCTGTGAACAATTTATGGATATCAGTGATGTAATAAGAGATGAAGATCTTATGGCATCCAAATCAGACTCACATCTGAACGGGATTGATCGTAGAGTTTTTACTTCTTGTTCTGCTCATAACATCCAAAAAATGGTTGCAAACATGGTTCCAAGTGTCAAATCAAAGTGGCCAAGTGCAAGAGAATTGAATCTTTTAAAGCGTAAAGCAAAAATAAACTCAAAGGACCAAACGAAAAGCTGGTGTGAAGATGGAAGTACAGAGGCTTCAGGTGCTCAATGTTTGACTTCAAAGGGCACATGTCCTGATTCACTGAATTATAGTAAGGTAGTCATGGATGTGAATCAAGACGAAGATAGCTTTGAGCATGATGGGGATGGGCAATGGCCGTTCCACACTTTTGTTGAGCAACTTATCATAGATATGTTTGATCCTGTTTGGGAGGTACGACATGGTAGCGTGATGGCACTGAGAGAGATTTTAGCGCATCAAGGTGGTTCTGCTGGAGTATTTAAACCTGACGCACACATGGGTGGGACCTTGTTTATTGAATTAGAAGACAAAAGTATATTGAAGAGAGAGAGGGAAATTGATTTAAATATGCAAGTTTCAGCTGATGAGTTTGTTTCAAACTTGAAGAGGCCAAAACTTGAAGATGTTTCATCATCAACCTTTGTGGATGGTGTGATGACTTGCAATAATGAAGGTGATGTAAAAATTAGCATTAATTCTGAAACACATGGATGTGAATTAACTTTGGATTGTGGGAATGGGCAATTTAACGGTAGTTCCGTTGATGTGGATCTGGAATCTCACGCTGATGGCTTTCGTGATACATTCAAGGAGTCTGCTAGTATAACAGAACAGAAGGGTGATTTTGATGACAATAAGGTTCCATCTGGAAATCTTAATGTGCTGAGAAATCTTCCTCAGAACAGTGAGCTGATGAACTTTGTTAAAGTGGCTAGAAGTTCCTGGCTTCAAAATTGTGAATTTCTTCAAGATTGTGTGATACGCTTTTTGTGTGTGTTGTCACTCGATCGCTTTGGAGATTATGTCTCTGATCAGGTTGTTGCTCCAGTGCGTGAAACCTGTGCACAGGCATTAGGTGCTGCATTTAAGTATATGCATCCCGCACTAGTAAATGAAACATTGAACATATTGTTGAAAATGCAGTGTAGGCCAGAATGGGAGATTCGTCATGGCAGTCTTCTTGGGATCAAATATTTGGTTGCTGTACGGCAGGATACGGTTGGTGTTGAATTGGAGATGCTATCCAATTTGCTTGGACGTGTTCTTCCTGCTTGTAAATCTGGGTTGGAGGACCCAGATGATGATGTCCGGGCAGTTGCTGCAGATGCTTTAATACCAGCTGCATCTGCAATTGTTTCCTTGCAGGGTCAAACATTGCATTCAATTGTGATGCTTTTATGGGATATATTGCTTGATTTGGATGATTTAAGTCCGTCGACCAGCAGTGTAATGAATCTGTTGGCAGAGATCTATTCTCAGGAAGATATGGCACCAAATATGTATAAAGTTTTTAAATTGGCAGACAAGGAAATGGAAAATGGAGGAGGAGGTGGTTGTGGTGATGACGATGGAGAAGAAAATCCTTATGTGCTTTCAACATTGGCACAGCGTTTGTGGCCCTTTATGAGACATAGTATCACATCTGTTCGCTATTCTGCAATAAGGACTTTGGAGAGGCTACTTGAAGCTGGATATAAGAGAAGCATGTCTGAGTTGTCTGGTGCTTCATTCTGGCCCTCTTCTATATTTGGAGATACCCTTAGAATCGTCTTCCAGAATCTGCTATTGGAAACAAATGAAGATATTTTGCAATGTTCTGAGAGAGTTTGGAGTCTTCTTGTTCAGTGTTCTATGGAGGACTTGGAGATGGCTGCGAGTTCTTATGGGGCTTCTTGGATAGAACTTGCATCTACACCATTTGGATCAGCATTAGATGCCTCGAAGATGTACTGGCCTGTTGCCTTCCCACGAAAAAGTCAAATTAGAGCTGCTGCTAAGATGAGAGCTGCAAAAATTGAAAATGAATGCGGTGTGGAATTTAGTCTTGATTCTGTAAAAGGAACTATTCCACAAGATAGAAATGGAGATGTTCCTGTGAGTTCTGTTAAGATAGTTGTTGGTGCTGATGTGGACACATCTGTAACTCATACCCGAGTAGTTACGGCAACTGCTTTGGGTTACTTTGCTTCTAAACTTCCAGTGGGTTCTTTAAAATATGTGATTGATCCACTGTGGAGCTCTCTAACCTCGTTGTCTGGTGTCCAACGCCAGGTTGCATCTATGGTCCTTATTTCTTGGTTCAAGGAAATTAAGATCAGGAATTCATCAAAAAACCTTGATGGTATCCCTGTTGCCCTCAAAGATTGGTTGCTGGACTTATTAGCTTGTTCTGACCCAGCATTCCCGACAAAAGATTCACTTCTTCCTTATGCTGAGCTTTCCAGAACCTATGCAAAGATGCGCAGTGAGGCAGGTCAATTACTAAATGTAGTCAAATCTTCTGGTATGTTCAATGATTTATTGGCAGCAACACAAATTGAGTTGGATCGCTTGAGTGTGGATGATGCCATTGGTTTTGCTTCAAAAATTCCAACCTTGTGTAATGATAGTTCTGCAAATGACTCCTTGGCAAAGAACATCATGGATGATATTGAATCCTCCAAACAGAGACTCTTGACAACTTCTGGATATTTAAAATGTGTTCAGAGCAACTTGCATGTTACAGTCACATCTGCAGTTGCAGCTGCTGTTGTCTGGATGTCTGAATTTCCTACAAGACTTACACCAATTATTTTGCCTTTGATGGCTTCAATCAGACGAGAGCAGGAGGAAATACTCCAAATGAAGTCTGCTGAGGCCCTTGCCGAGCTAATGTATCACTGTGTTGCTCGTAGACCTTGCCCGAATGATAAATTAATCAAGAATATATGTAGTTTAACTTGCATGGATCCCTCTGAGACCCCTCAAGCCAAATCCCTTTGCACCATTGAGAGTATCGATGACCAAGGTCTCTTGTCTTTTAGAACTCCTGTGAGCAAACAAAAGTCAAAGGTTCATGTGCTGGCTGGTGAAGATCGTTCAAAGGTGGAGGGATTTTTAAGTAGACGTGGATCTGAGTTATCATTGAGGCTTCTATGTGTAAAGTTTGGTCTGTCATTATTTGATAAGCTTCCTAAGCTGTGGGATTGCCTTACTGAAGTTCTTAAACCCATCTCCTCTGAATCTCTGCCTATCACTGAGGAAAAGCAAGTTATTGTGCCTATCGAGTCTATTAGTGATCCTCAGATCTTGATTAACAATATCCAGGTGGTGCGCTCAATTTCTCCCGTGTTAAATGAGGGGTTGAAGCCAAAACTATTGACGCTTCTCCCATGCATCTTCAAATGTGTTCAGCATTCTCATGCTGCAGTCAGATTAGCTGCTTCACGCTGCATCACATCCATGGCACAGTCGATGACTGTGAAAGTTATGGGAGCTGTGGTTGAAAATGCTATCCCTATGTTGGAAGATGCATCATCTGTTTATGCCCGACAAGGAGCAGGCATGTTGATTAGTTTTCTTGTTCAGGGGCTTGGTGTAGAGTTGGTTCCTTATGCTCCTCTGTTGGTGGTTCCACTTTTAAGGTGTATGAGTGATTGTGATCAGTCTGTCAGACAGAGTGTGACCCATAGTTTTGCTGCTCTTGTTCCTTTACTTCCTTTGGCACGAGGCCTTCCTCAACCGATGGGATTAGGGGAAGGTGTATCTAGAAATGCAGAAGATTTGCAGTTTCTAGAGCAACTACTTGACAACTCTCATATTGAAGATTTCAAGTTGTGCACTGAATTGAAAGTAACATTGAGGAGGTATCAGCAGGAAGGCATAAATTGGTTAGCCTTTTTAAAACGTTTCAAGCTTCATGGAATTTTATGTGATGATATGGGACTTGGAAAGACACTTCAAGCATCAGCAATTGTGGCCTCTGATATAGCTGAACATCGAACTACAATTGGGAATGAGAATCTTCTGGCATCTTTAATTATCTGCCCATCAACTCTAGTTGGGCACTGGGCCTTTGAGATAGAGAAGTATATTGATGTTTCAGTTATATCTAGTCTTCAATATGTTGGTTCTGCTCAGGAAAGAGTGCTTCTTCGAGATCATTTTTGTAAGCATAATGTCATCATAACATCATATGATGTTGTTCGTAAAGATGTTGATTTTCTGGGACAGCTGCTGTGGAATTACTGCATTTTAGATGAAGGGCATATAATCAAGAATGCTAAGTCTAAAGTTACACTTGCTGTAAAACAGTTGAAAGCCCAACACCGCTTGATATTGAGTGGGACACCTATACAGGTCTGTGATGAGTTTCTCATTGAAAATAATATAATGGACTTGTGGTCCCTTTTTGATTTTCTGATGCCTGGATTTCTTGGAACTGAGAGACAGTTCCAAGCTGCGTATGGAAAACCACTATTAGCTGCAAGAGATCCAAAATGCTCTGCTAAGGATGCTGAAGCAGGAGTACTTGCTATGGAGGCATTGCATAAGCAGGTAATGCCTTTCCTCCTTCGTAGGACAAAGGATGAAGTCTTGTCTGATCTGCCAGAGAAAATAATTCAAGACAGATACTGTGATTTGAGCCCTGTGCAGTTTAAACTTTATGAACAATTTTCTGGTTCTCGTGTAAAACAAGAAATGTCATCTATTGTAACAACGAATGAGTCTGCTGCAGCAGAAGGAAAAATCAATTCCTTGTTTCAGGCACTCCAGTACTTGCTGAAACTCTGTAGTCATCCATTGCTTGTCACGGGTGAGAAGATTCCAGATTCACTTTCTACCATCCTCTTGGAACTGTTTCCTGCTGGCTCTGATGTTGTTTCAGAACTTCACAAACTCCATCACTCCCCAAAATTAGTTGCTCTTCATGAGATTCTTGAAGAATGTGGAATTGGAGTTGATAATTCAGGTTCTGAGGCTGCAGTTAACGTTGGGCAGCATAGGGTCTTGATATTCGCCCAGCATAAGGCTTTCTTGGATATAATTGAAAGAGATTTGTTTCAAACACACATGAAAAGTATCACATATTTGCGGTTAGATGGATCAGTTGCGCCAGAAAAGCGTTTTGAAATTGTCAAAGCTTTCAATTCAGACCCTACCATTGATGTCTTACTGCTTACAACACACGTCGGTGGGCTGGGTTTGAACCTGACGTCTGCAGATACCCTCGTTTTTGTGGAGCATGACTGGAATCCAATGCGAGACCATCAGGCTATGGATAGAGCACACAGGTTAGGTCAGAAAAAAGTAGTTAATGTCCATCGGCTAATAATGCGAGGTACTTTGGAAGAGAAAGTTATGAGTCTACAAAGGTTCAAAGTGTCAGTGGCTAATGCTGTCATTAATGCTGAAAATGCTAGTATGAAAACAATGAATACAGATCAGTTGCTTGATTTATTTGCATCAGCAGAATCCTCCAAAAAGGGCGCATCTGGTGTGAAAAATTCAGAGAACAACTCTGATGGAGACGCTAAATTAGTAGGCAGTGGGAAGGGATTGAAATCAATACTTGGCGGATTGGAGGAGCTATGGGACCAATCACAATATACAGAGGAGTACAATCTGAGTCAATTTTTAGCAAGGCTTAATGGCTAA 6378 0.4105 MHLKMWALHFVSVHHKTEPYDKILVSVSGLKSNPLECFMDIVETNCFNYKLDTNGRLKFLQHNPKIGERCKQSSRLQRLLTLLDTGSTQATRLTAARQIGDIAKSHPQDLTSLLKKVSQYLRSKNWDTRVAAAHAIGSIAENVKHISLAELFASIVSKMSENGITCSIEDLCSWPYLQSKFTGSSFRSFDMNKVLEFGALLASGGQEYDIGNDNIKNPKERLVRQKQNLRRRLGLDVCEQFMDISDVIRDEDLMASKSDSHLNGIDRRVFTSCSAHNIQKMVANMVPSVKSKWPSARELNLLKRKAKINSKDQTKSWCEDGSTEASGAQCLTSKGTCPDSLNYSKVVMDVNQDEDSFEHDGDGQWPFHTFVEQLIIDMFDPVWEVRHGSVMALREILAHQGGSAGVFKPDAHMGGTLFIELEDKSILKREREIDLNMQVSADEFVSNLKRPKLEDVSSSTFVDGVMTCNNEGDVKISINSETHGCELTLDCGNGQFNGSSVDVDLESHADGFRDTFKESASITEQKGDFDDNKVPSGNLNVLRNLPQNSELMNFVKVARSSWLQNCEFLQDCVIRFLCVLSLDRFGDYVSDQVVAPVRETCAQALGAAFKYMHPALVNETLNILLKMQCRPEWEIRHGSLLGIKYLVAVRQDTVGVELEMLSNLLGRVLPACKSGLEDPDDDVRAVAADALIPAASAIVSLQGQTLHSIVMLLWDILLDLDDLSPSTSSVMNLLAEIYSQEDMAPNMYKVFKLADKEMENGGGGGCGDDDGEENPYVLSTLAQRLWPFMRHSITSVRYSAIRTLERLLEAGYKRSMSELSGASFWPSSIFGDTLRIVFQNLLLETNEDILQCSERVWSLLVQCSMEDLEMAASSYGASWIELASTPFGSALDASKMYWPVAFPRKSQIRAAAKMRAAKIENECGVEFSLDSVKGTIPQDRNGDVPVSSVKIVVGADVDTSVTHTRVVTATALGYFASKLPVGSLKYVIDPLWSSLTSLSGVQRQVASMVLISWFKEIKIRNSSKNLDGIPVALKDWLLDLLACSDPAFPTKDSLLPYAELSRTYAKMRSEAGQLLNVVKSSGMFNDLLAATQIELDRLSVDDAIGFASKIPTLCNDSSANDSLAKNIMDDIESSKQRLLTTSGYLKCVQSNLHVTVTSAVAAAVVWMSEFPTRLTPIILPLMASIRREQEEILQMKSAEALAELMYHCVARRPCPNDKLIKNICSLTCMDPSETPQAKSLCTIESIDDQGLLSFRTPVSKQKSKVHVLAGEDRSKVEGFLSRRGSELSLRLLCVKFGLSLFDKLPKLWDCLTEVLKPISSESLPITEEKQVIVPIESISDPQILINNIQVVRSISPVLNEGLKPKLLTLLPCIFKCVQHSHAAVRLAASRCITSMAQSMTVKVMGAVVENAIPMLEDASSVYARQGAGMLISFLVQGLGVELVPYAPLLVVPLLRCMSDCDQSVRQSVTHSFAALVPLLPLARGLPQPMGLGEGVSRNAEDLQFLEQLLDNSHIEDFKLCTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAEHRTTIGNENLLASLIICPSTLVGHWAFEIEKYIDVSVISSLQYVGSAQERVLLRDHFCKHNVIITSYDVVRKDVDFLGQLLWNYCILDEGHIIKNAKSKVTLAVKQLKAQHRLILSGTPIQVCDEFLIENNIMDLWSLFDFLMPGFLGTERQFQAAYGKPLLAARDPKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSPVQFKLYEQFSGSRVKQEMSSIVTTNESAAAEGKINSLFQALQYLLKLCSHPLLVTGEKIPDSLSTILLELFPAGSDVVSELHKLHHSPKLVALHEILEECGIGVDNSGSEAAVNVGQHRVLIFAQHKAFLDIIERDLFQTHMKSITYLRLDGSVAPEKRFEIVKAFNSDPTIDVLLLTTHVGGLGLNLTSADTLVFVEHDWNPMRDHQAMDRAHRLGQKKVVNVHRLIMRGTLEEKVMSLQRFKVSVANAVINAENASMKTMNTDQLLDLFASAESSKKGASGVKNSENNSDGDAKLVGSGKGLKSILGGLEELWDQSQYTEEYNLSQFLARLNG 2125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00311 2125 Gene3D - 564 760 IPR011989 -
Spst11g00311 2125 FunFam TATA-binding protein-associated factor 1777 2088 - -
Spst11g00311 2125 FunFam TATA-binding protein-associated factor BTAF1 573 760 - -
Spst11g00311 2125 Gene3D - 949 1483 IPR011989 -
Spst11g00311 2125 SMART ultradead3 1523 1727 IPR014001 -
Spst11g00311 2125 CDD DEXHc_Mot1 1527 1767 IPR044078 GO:0005524
Spst11g00311 2125 Gene3D - 1777 2088 IPR027417 -
Spst11g00311 2125 Gene3D - 67 161 IPR011989 -
Spst11g00311 2125 PANTHER TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172 72 2124 IPR044972 GO:0003677|GO:0016887|GO:0017025
Spst11g00311 2125 FunFam TATA-binding protein-associated factor BTAF1 69 164 - -
Spst11g00311 2125 SMART helicmild6 1921 2007 IPR001650 -
Spst11g00311 2125 Pfam Helicase conserved C-terminal domain 1905 2007 IPR001650 -
Spst11g00311 2125 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1509 1767 IPR027417 -
Spst11g00311 2125 Pfam SNF2-related domain 1545 1843 IPR000330 GO:0005524|GO:0140658
Spst11g00311 2125 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1897 2053 IPR001650 -
Spst11g00311 2125 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1768 2063 IPR027417 -
Spst11g00311 2125 SUPERFAMILY ARM repeat 74 1566 IPR016024 -
Spst11g00311 2125 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1539 1709 IPR014001 -
Spst11g00311 2125 Pfam HEAT repeat 1369 1398 IPR000357 GO:0005515
Spst11g00311 2125 Pfam Domain of unknown function (DUF3535) 856 1310 IPR022707 -
Spst11g00311 2125 FunFam TATA-binding protein-associated factor BTAF1 1274 1485 - -
Spst11g00311 2125 CDD SF2_C_SNF 1876 2018 - -
Spst11g00311 2125 Gene3D - 1499 1766 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00311 Spst-Chr11 10910873 10932595 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00311 1522 2062 RAD5 or RAD16-like Gene Family AT1G02670 24.913 3.69e-36 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Spst11g00311 DUF3535 5e-102 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g00311 K15192 - gmx:100777977 3603.53