Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00297 ATGCAACCCAAATCCGCCGCCAGACTGACCAGGTTCCGCTCAACTCCGACGACCTGGTTGGAATCACTTCTTTTGAAAGAGGAGGAGGAGGAAGAAGAAGAAGAAGAAAGCGAAGAAGGTGAAGATGAGCCCTTGAGCTTTACTCAGCTGCTTTCTACCATCGCTGCTCCCTCTTCATCCCAACACCAACACTATGGAACACAGGATTACTCTCCCACCTCTATGCCCATGCCCACGCCCAATCCAATCGCACACAAGGTTACTCCCCCCGACATCAAAATGGACAACATGTTCACGTTTGAGGATTCGTTACCTTGTAGAGTTCGAGCAAAGCGTGGCTGTGCTACGCATCCCAGGAGTATTGCCGAAAGGGTTCGCAGGACCCGTATCAGTGACCGCATCAGAAAGCTTCAAGAACTTGTGCCAAACATGGATAAGCAAACAAATACTGCAGACATGTTAGATGAGGCGGTAGCTTATGTGAAGTTTCTACAAAAGCAAATTGAGGAACTGACAGAGCATCAACGTAGGTGTAAATGTATGGTTCAAGAGTGA 555 0.4829 MQPKSAARLTRFRSTPTTWLESLLLKEEEEEEEEEESEEGEDEPLSFTQLLSTIAAPSSSQHQHYGTQDYSPTSMPMPTPNPIAHKVTPPDIKMDNMFTFEDSLPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTNTADMLDEAVAYVKFLQKQIEELTEHQRRCKCMVQE 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00297 184 CDD bHLH_AtbHLH_like 119 171 IPR045239 -
Spst11g00297 184 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 117 182 IPR036638 GO:0046983
Spst11g00297 184 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 114 164 IPR011598 GO:0046983
Spst11g00297 184 Coils Coil 20 43 - -
Spst11g00297 184 MobiDBLite consensus disorder prediction 25 43 - -
Spst11g00297 184 FunFam Transcription factor bHLH130 family 115 183 - -
Spst11g00297 184 Pfam Helix-loop-helix DNA-binding domain 119 165 IPR011598 GO:0046983
Spst11g00297 184 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 58 178 - -
Spst11g00297 184 Coils Coil 154 184 - -
Spst11g00297 184 Gene3D - 115 184 IPR036638 GO:0046983
Spst11g00297 184 MobiDBLite consensus disorder prediction 20 46 - -
Spst11g00297 184 SMART finulus 120 170 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00297 Spst-Chr11 10765111 10766937 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00297 91 184 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09180 77.660 9.21e-47 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst11g00297 HLH 1.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g00297 - - vum:124835640 239.58