Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00293 ATGTGTGTGATCATTGTAAGTGGCAAGTCATCAGCTGTATATGCTTGTGCCAAAGAGCAAGGGTTAAGTATTTTAGAGCTAACTCAACCTAATCTTCCTGTGGGTGGCATAGCTGGCCAATCAGATCGAGGTGCACAATCTGTTGTTCTTTCTGGTGGTTATGTGGATGACGAGGATCATGGAGAATGGTTTCTCTACACTGGAAGCGGTGGTAAGGATCTTAGCGGCAACAAACGTACCAACAAGAGTCACTCTTTTGACCAGAAGTTTGAGAAGTACAACCGTGCACTTCAAGTTAGTTGTCTCCAGGGTTATCCTGTTCGGGTTGTCAGATCTCACAAAGAAAAGCGATCTTCATATGCCCCAGAGATTGGCGTGCGGTATGATGGAATTTATAGAATTGAAAAGTGTTGGCAGATAGCGGGATTGCAGGGTTTCAAAGTTTGCCGGTATCTATTCGTTAGGTGTGATAATGAACCAGCCCCTTGGACAAGTGATGATGTTGGAGATAGGCCCAGAGCCTTGCCGGTCATTCGTGAACTGGAAAAGGCTACAGTTATATATGAAAGGACTGAATCTGCATCTTGGGATTATGATGCGAAAGATTCTCGTTGGAAATGGATGAAACCACCACCTCCCAGCAGCAAAAAGGTACAAATTGAAGAACCCGTAGAGGTAACAAGGGCAAAGACAGATAGCGATATAAGGAAGTTCCAACTTAAGTCTATCAAGGAACAATTGCATGAAGGGTTCTCGTGCATGATATGTAAGGAAGTTATGGTTTCACCAGTGACTACACCTTGTGCTCATAACTTCTGCAAGTCCTGTTTGGAAGGTGAATTTGCTGGTCAGGCTTTTGTGAAGGAGAGAAGTAGGGGTGGGAGAACGCTTCGTTCCCAAAAAAATGTGATGAAATGTTCTTCCTGCCCTATTGACATTTCTGATTATCTTCAGAACATTCAGGTTGATATAGATTTGAAGAGTGCGATTGAGTCACTGAAAGCCAAGGTAGAAGAAATTGAAGAATCACTGGAATCAAGTGAAGATGCAGCAGATGGATTTCAGGACAAAGGTGTTGGCAAGGATGACGTTACTGATTCAGGGAACCAAAATTCTGTAGAGCAGTTGAATGATCTACCTGAAGGATCTGATGTCGATGAGCTTAAAGACACCAATACTAAGGGGCAAGATCGAGAAGTAATGTGCAATGGAAAGAGAAAGAAAGGTGCTGATGAAACACAATCGCCTGATGATAAAATGGAAGAAAGAGTTAAAAGAAACAGAAAGACCAGCAGTCGCTGA 1302 0.4301 MCVIIVSGKSSAVYACAKEQGLSILELTQPNLPVGGIAGQSDRGAQSVVLSGGYVDDEDHGEWFLYTGSGGKDLSGNKRTNKSHSFDQKFEKYNRALQVSCLQGYPVRVVRSHKEKRSSYAPEIGVRYDGIYRIEKCWQIAGLQGFKVCRYLFVRCDNEPAPWTSDDVGDRPRALPVIRELEKATVIYERTESASWDYDAKDSRWKWMKPPPPSSKKVQIEEPVEVTRAKTDSDIRKFQLKSIKEQLHEGFSCMICKEVMVSPVTTPCAHNFCKSCLEGEFAGQAFVKERSRGGRTLRSQKNVMKCSSCPIDISDYLQNIQVDIDLKSAIESLKAKVEEIEESLESSEDAADGFQDKGVGKDDVTDSGNQNSVEQLNDLPEGSDVDELKDTNTKGQDREVMCNGKRKKGADETQSPDDKMEERVKRNRKTSSR 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00293 433 ProSiteProfiles YDG domain profile. 7 155 IPR003105 -
Spst11g00293 433 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 33 346 IPR045134 -
Spst11g00293 433 ProSiteProfiles Zinc finger RING-type profile. 253 312 IPR001841 -
Spst11g00293 433 SUPERFAMILY RING/U-box 245 332 - -
Spst11g00293 433 MobiDBLite consensus disorder prediction 343 433 - -
Spst11g00293 433 Gene3D - 31 195 IPR036987 -
Spst11g00293 433 SMART ring_2 253 312 IPR001841 -
Spst11g00293 433 MobiDBLite consensus disorder prediction 364 378 - -
Spst11g00293 433 Pfam RING-type zinc-finger 253 289 IPR027370 -
Spst11g00293 433 Coils Coil 330 357 - -
Spst11g00293 433 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 232 357 IPR013083 -
Spst11g00293 433 Pfam SAD/SRA domain 33 158 IPR003105 -
Spst11g00293 433 SMART G9a_1 12 159 IPR003105 -
Spst11g00293 433 SUPERFAMILY PUA domain-like 33 179 IPR015947 -
Spst11g00293 433 MobiDBLite consensus disorder prediction 382 433 - -
Spst11g00293 433 ProSitePatterns Zinc finger RING-type signature. 268 277 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00293 Spst-Chr11 10716379 10720021 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00293 34 373 C2H2 Transcription Factor Family AT5G39550 56.598 1.13e-131 391
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g00293 K10638 - gmx:100801535 670.233