Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00290 ATGGCTGTGCAGCTTCCTTGCGATGAGGGGGTATGTTTGGTGTGCAAGGCAGTGCCTGGAGAGGAAGAGACGCTTCGATGCGTCACCTGCGACACTCCTTGGCACGTCCCGTGCCTCTCCGTCCCTCCGCCCACTCTTGCAGCCACCACTCGCTGGTTGTGTCCGGACTGTTTTAATCCTCACCTTCCACCCGTCCCCGCTCCCCCTCAAAATGAACTCGTCACCGCAATGTTGGCTGTTGAAAACGACGCTTCTCTCACGCCAAGCCAGAAGGCCAAGAAACGTCAACAACTCATCACTGGAAAAGCTCTTCCGGAAGAAGACGAAGAAGAAGACGATGATAAATCGAATAACGCTTCCGTGTTTGATATTCTAACTCGATCTCTCAACTGCTCCATCTGTTTCCAGTTACCGGAGAGACCCGTCACGGGGAACACGGGCTGTGTCAAGTGCCGGCAGATTATTCCGCCAAAGATGGCAAGCCAGCCCCGTATCAATTCTGCATTGGTGTTTGCGATTCGCCTTGCCAGGGCGGATTCTAGCAGGAATGGTGGTGCCGGAGGAGTTAGGTCTGTCAGCCATTTCCTGCACAATAAAGACAGACCCGATGAGCCGTTCACCACAGAACGTGCACGGAGGAATGGCCGTGCCAATGCGGCCAGTGGAAAAATATTTGTGACTGTGCCTACGGATCATTTTGGTCCAATCACGGCCGAGAATGACCCTGTGCGGAATCAGGGCTTGCTGGTCGGTGAAAGTTGGAGAGACAGACTGGAATGCAGGCAATGGGGTGCTCACTTTGTTCCTGTGGGTGGCATAGCTGGCCAATCAGATCGAGGTGCACAATCTGTTGTTCTTTCTGGTGGTTATGTGGATGACGAGGATCATGGAGAATGGTTTCTCTACACTGGAAGCGGTGGTAAGGATCTTAGCGGCAACAAACGTACCAACAAGAGTCACTCTTTTGACCAGAAGTTTGAGAAGTACAACCGTGCACTTCAAGTTAGTTGTCTCCAGGGTTATCCTGTTCGGGTTGTCAGATCTCACAAAGAAAAGCGATCTTCATATGCCCCAGAGATTGGCGTGCGGTATGATGGAATTTATAGAATTGAAAAGTGTTGGCAGATAGCGGGATTGCAGGGTTTCAAAGTTTGCCGGTATCTATTCGTTAGGTGTGATAATGAACCAGCCCCTTGGACAAGTGATGATGTTGGAGATAGGCCCAGAGCCTTGCCGGTCATTCGTGAACTGAAAAAGGCTACAGTTATATATGAAAGGACTGAATCTGCATCTTGGGATTATGATGCGAAAGATTCTCGTTGGAAATGGATGAAACCACCACCTCCCAGCAGCAAAAAGGTACAAATTGAAGAACCCGTAGAGGTAACAAGGGCAAAGACAGATAGCGATATAAGGAAGTTCCAACTTAAGTCTATCAAGGAACAATTGCATAAAGGGTTCTCGTGCATGATATGTAAGGAAGTTATGGTTTCACCAGTGACTACACCTTGTGCTCATAACTTCTGCAAGTCCTGTTTGGAAGGTGAATTTGCTGGTCAGGCTTTTGTGAAGGAGAGAAGTAGGGGTGGGAGAACGCTTCGTTCCCAAAAAAATGTGATGAAATGTCCTTCCTGCCCTATTGACATTTCTGATTATCTTCAGAACATTCAGGTTGATATAGATTTGAAGAGTGCGATTGAGTCACTGAAAGCCAAGGTAGAAGAAATTGAAGAATCACTGGAATCAAGTGAAGATGCAGCAGATGGATTTCAGGACAAAGGTGTTGGCAAGGATGACGTTACTGATTCAGGGAACCAAAATTCTGTAGAGCAGTTGAATGATCTACCTGAAGGATCTGATGTCGATGAGCTTAAAGACACCAATACTAAGGGGCAAGATCGAGAAGTAATGTGCAATGGAAAGAGAAAGAAAGGTGCTGATGAAACACAATCGCCTGATGATAAAATGGAAGAAAGAGTTAAAAGAAACAGAAAGACCAGCAGTCGCTGA 2010 0.4756 MAVQLPCDEGVCLVCKAVPGEEETLRCVTCDTPWHVPCLSVPPPTLAATTRWLCPDCFNPHLPPVPAPPQNELVTAMLAVENDASLTPSQKAKKRQQLITGKALPEEDEEEDDDKSNNASVFDILTRSLNCSICFQLPERPVTGNTGCVKCRQIIPPKMASQPRINSALVFAIRLARADSSRNGGAGGVRSVSHFLHNKDRPDEPFTTERARRNGRANAASGKIFVTVPTDHFGPITAENDPVRNQGLLVGESWRDRLECRQWGAHFVPVGGIAGQSDRGAQSVVLSGGYVDDEDHGEWFLYTGSGGKDLSGNKRTNKSHSFDQKFEKYNRALQVSCLQGYPVRVVRSHKEKRSSYAPEIGVRYDGIYRIEKCWQIAGLQGFKVCRYLFVRCDNEPAPWTSDDVGDRPRALPVIRELKKATVIYERTESASWDYDAKDSRWKWMKPPPPSSKKVQIEEPVEVTRAKTDSDIRKFQLKSIKEQLHKGFSCMICKEVMVSPVTTPCAHNFCKSCLEGEFAGQAFVKERSRGGRTLRSQKNVMKCPSCPIDISDYLQNIQVDIDLKSAIESLKAKVEEIEESLESSEDAADGFQDKGVGKDDVTDSGNQNSVEQLNDLPEGSDVDELKDTNTKGQDREVMCNGKRKKGADETQSPDDKMEERVKRNRKTSSR 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00290 669 SMART G9a_1 238 395 IPR003105 -
Spst11g00290 669 Pfam SAD/SRA domain 246 394 IPR003105 -
Spst11g00290 669 MobiDBLite consensus disorder prediction 600 614 - -
Spst11g00290 669 ProSiteProfiles YDG domain profile. 243 391 IPR003105 -
Spst11g00290 669 MobiDBLite consensus disorder prediction 194 211 - -
Spst11g00290 669 SMART PHD_3 11 58 IPR001965 -
Spst11g00290 669 SMART ring_2 489 545 IPR001841 -
Spst11g00290 669 SMART ring_2 12 57 IPR001841 -
Spst11g00290 669 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 57 IPR013083 -
Spst11g00290 669 MobiDBLite consensus disorder prediction 618 669 - -
Spst11g00290 669 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 214 409 - -
Spst11g00290 669 MobiDBLite consensus disorder prediction 181 214 - -
Spst11g00290 669 ProSiteProfiles Zinc finger RING-type profile. 489 545 IPR001841 -
Spst11g00290 669 SUPERFAMILY PUA domain-like 217 415 IPR015947 -
Spst11g00290 669 MobiDBLite consensus disorder prediction 579 669 - -
Spst11g00290 669 ProSitePatterns Zinc finger PHD-type signature. 12 57 IPR019786 -
Spst11g00290 669 Gene3D - 214 412 IPR036987 -
Spst11g00290 669 ProSiteProfiles Zinc finger PHD-type profile. 9 60 IPR019787 -
Spst11g00290 669 MobiDBLite consensus disorder prediction 85 117 - -
Spst11g00290 669 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 468 593 IPR013083 -
Spst11g00290 669 Coils Coil 566 593 - -
Spst11g00290 669 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 3 593 IPR045134 -
Spst11g00290 669 Pfam RING-type zinc-finger 489 543 IPR027370 -
Spst11g00290 669 SUPERFAMILY RING/U-box 481 570 - -
Spst11g00290 669 ProSitePatterns Zinc finger RING-type signature. 504 513 IPR017907 -
Spst11g00290 669 SUPERFAMILY FYVE/PHD zinc finger 8 65 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00290 Spst-Chr11 10654134 10657568 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00290 1 609 C2H2 Transcription Factor Family AT5G39550 51.724 0.0 630
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g00290 K10638 - gmx:100801535 1076.23