Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00278 ATGAGAATGAGGGTCTTGCAATTGTGTCCTTCCATGGCTTCCACATGCAGAGCTCCACTGCAGGCAGAATTGGGAAAGTTCTGGTTTTTGAGAAACAGAAGTAGTCGGAATATTTTGCAGGTCAAGTGCTCTGGCAGACCCCAGAGAGCCCCCCCTGGAGTTGACACCAGAATCCATTGGGTAAACGAGGATGAAGGTTGGATTGGAGGCGGAGACAGAGAAAGAGATTCCAAAGCCAGTATGCTTGGTCATGGTGATGACTTGGCAGATTTGCTCCTCACCTCTTCTTTGGGTTCTCATTACGAATTCTTAGGAGTTTCACCGGATGCAGATTTAGAAGAAATTAAAGTTGCTTACAGGAAACTCTCGAAGGAGTATCATCCGGACACAACTTCCCTCCCTCTCAAAAGTGCCTCTGAAAAATTCATGAAACTGAGAGAGGTTTACAACGTTCTTAGCAACGAAGAGAGTCGAAAATTTTATGATTGGAGCCTTGCTCAAGAGGCTGCAAGTCGGCACGAAGAGAAGATGAAAATGAAATTGGAGGATCCTCGCGAGCAAGAAATCCGGAACTGGGTGCCCGTTCCTGACATGGTCGACCGCCTTGGTGGAAGGAACATGAAGCTTAGTGATCAGGCAGTCTCTGCCCTCACCATTGATGTTTTTATCATTATTTTTTCCATATGTTGCATCATCTATGTTATTTTCTTTCTAGAACCATATTACTACTAG 732 0.4508 MRMRVLQLCPSMASTCRAPLQAELGKFWFLRNRSSRNILQVKCSGRPQRAPPGVDTRIHWVNEDEGWIGGGDRERDSKASMLGHGDDLADLLLTSSLGSHYEFLGVSPDADLEEIKVAYRKLSKEYHPDTTSLPLKSASEKFMKLREVYNVLSNEESRKFYDWSLAQEAASRHEEKMKMKLEDPREQEIRNWVPVPDMVDRLGGRNMKLSDQAVSALTIDVFIIIFSICCIIYVIFFLEPYYY 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00278 243 Gene3D DnaJ domain 92 185 IPR036869 -
Spst11g00278 243 ProSiteProfiles dnaJ domain profile. 99 165 IPR001623 -
Spst11g00278 243 Coils Coil 135 155 - -
Spst11g00278 243 ProSitePatterns Nt-dnaJ domain signature. 142 161 IPR018253 -
Spst11g00278 243 CDD DnaJ 100 154 IPR001623 -
Spst11g00278 243 PRINTS DnaJ domain signature 137 157 IPR001623 -
Spst11g00278 243 PRINTS DnaJ domain signature 101 119 IPR001623 -
Spst11g00278 243 PRINTS DnaJ domain signature 119 134 IPR001623 -
Spst11g00278 243 Pfam DnaJ domain 100 162 IPR001623 -
Spst11g00278 243 PANTHER NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT T, CHLOROPLASTIC 33 241 IPR044618 -
Spst11g00278 243 SUPERFAMILY Chaperone J-domain 96 166 IPR036869 -
Spst11g00278 243 SMART dnaj_3 98 157 IPR001623 -
Spst11g00278 243 FunFam DnaJ homolog subfamily C member 4 89 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00278 Spst-Chr11 9840907 9841714 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00278 100 167 C2H2 Transcription Factor Family AT1G74250 36.111 3.10e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g00278 K23051 - gmx:100819309 328.561