Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00273 ATGAGGGTCTTGCAATTGTGTCCTTCCATGGCTTCCACATGCAGAGCTCCACTGCAGGCAGAATTGGGAAAGTTCTGGTTTTTGAGAAACAGAAGTAGTCGGAATATTTTGCAGGTCAAGTGCTCTGGCAGACCCCAGAGAGCCCCCCCTGGAGTTGACACCAGAATCCATTGGGAAAACGAGGATGAAGGTTGGATTGGAGGCGGAGACAGAGAAAGAGATTCCAAAGCCAGTAACATGCTCGGTCCTGGTGATGACTTGGCAGATTTGCTCCTCACCTCTTCTTTGGGTTCTCATTACGAATTCTTAGGAGTTTCACCGGATGCAGATTTAGAAGAAATTAAAGTTGCTTACAGGAAACTCTCGAAGGAGTATCATCCGGACACAACTTCCCTCCCTCTCAAAAGTGCCTCTGAAAAATTCATGAAACTGAGAGAGGTTTACAACGTTCTTAGCAACGAAGAGAGTCGAAAATTTTATGATTGGAGCCTTGCTCAAGAGGCTGCAAGTCGGCACGAAGAGAAGATGAAAATGAAATTGGAGGATCCTCGCGAGCAAGAAATCCGGAACTGGGTACCCGTTCCTGACATGGTCGACCGCCTTGGTGGAAGGAACATGAAGCTTAGTGATCAGGCAGTCTCTGCCCTCACCATTGATGTTTTTATCATTATTTTTTCCATATGTTGCATCATCTATGTTATTTTCTTTCTAGAACCATATTACTACTAG 729 0.4527 MRVLQLCPSMASTCRAPLQAELGKFWFLRNRSSRNILQVKCSGRPQRAPPGVDTRIHWENEDEGWIGGGDRERDSKASNMLGPGDDLADLLLTSSLGSHYEFLGVSPDADLEEIKVAYRKLSKEYHPDTTSLPLKSASEKFMKLREVYNVLSNEESRKFYDWSLAQEAASRHEEKMKMKLEDPREQEIRNWVPVPDMVDRLGGRNMKLSDQAVSALTIDVFIIIFSICCIIYVIFFLEPYYY 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00273 242 FunFam DnaJ homolog subfamily C member 4 88 185 - -
Spst11g00273 242 Gene3D DnaJ domain 91 184 IPR036869 -
Spst11g00273 242 PRINTS DnaJ domain signature 136 156 IPR001623 -
Spst11g00273 242 PRINTS DnaJ domain signature 100 118 IPR001623 -
Spst11g00273 242 PRINTS DnaJ domain signature 118 133 IPR001623 -
Spst11g00273 242 ProSitePatterns Nt-dnaJ domain signature. 141 160 IPR018253 -
Spst11g00273 242 SUPERFAMILY Chaperone J-domain 95 165 IPR036869 -
Spst11g00273 242 Coils Coil 134 154 - -
Spst11g00273 242 SMART dnaj_3 97 156 IPR001623 -
Spst11g00273 242 Pfam DnaJ domain 99 161 IPR001623 -
Spst11g00273 242 PANTHER NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT T, CHLOROPLASTIC 31 240 IPR044618 -
Spst11g00273 242 CDD DnaJ 99 153 IPR001623 -
Spst11g00273 242 ProSiteProfiles dnaJ domain profile. 98 164 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00273 Spst-Chr11 9510720 9511524 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00273 99 166 C2H2 Transcription Factor Family AT1G74250 36.111 2.55e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g00273 K23051 - gmx:100819309 331.643