Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00271 ATGACATCCAATAATCCTTATGAGATCATGGATGAAGAGGAATTTGATTGGGAAGCAGCTGCTAGAGAAATCGACGTCGTTTGCCAGATGAGTAGTGACACACAGGGAAAGGGAAAACAGCAATCCACTCTCGATAAGTTCGTGTCTATTGTCAATGCCAAGAAGGAAACCCCAACACCGCAGTTCCAAGAAGATTACCAAAGCCCTACCTTTGTCCACCACATTGACGAGGAGGCGGCCAAAACCTGGATATATCCGGTTAATGTTCCTCTTCGTGACTATCAATTTCATATCACCGAGTCCGCACTCTTCTCAAACACATTGGTGGCCTTGCCAACGGGTCTTGGCAAAACCCTTATTGCTGCAGTTGTCATGTATAATTACTTCAGATGGTTTCCTCAAGGCAAAATAGTCTTTGCTGCTCCTTCTCGGCCACTTGTCATGCAGCAGATTGAAGCTTGCCACAATATTGTGGGGATACCTCAAGAATGGACAGTTGATATGACTGGTCAGCTAAGTCCTCCCAAAAGAGCTCAATTTTGGAAAACAAAGCGAGTATTCTTTGTCACTCCACAAGTGTTGGAAAAGGATATTCATTCTGGTACATGTTTGGCGAAGTACTTGGTATGTTTGGTGATCGACGAAGCTCACAGAGCAATGGGAAATTACGCCTATTGTGAAGCAGTTCGCGAGTTAATGGCTGTACCGCTACAGCTGAGAATATTAGCGTTAACTGCAACACCAGGATCAAAGCAACAGACAGTCCAGGCCGTCGTTGATAATCTGCATATCTCCAGACTTGAATATCGCAGCGAAAATGACCATGATGTTATCTCATATGTTCACAATAGGAAGATAGAATTGATACAGGTTGCAATGGGCCCAGAAGCTGTAGAAATAAACAGTAAGTTTATGGAAGTAATACGTCCTATAGTTGCCAGGCTTTCAAATATTGGTGTCATTCAGAACAGAGATTACCGCACTGCTAGGCAAGATCTTTCTCATGTCAACTATGAAGATGTTGAAGGGTATTTTGGAGTTCTCATCACTCTTTATTACATCCATAAGTTACTCTCAAGCCATGGAATAAGGCCAGCATACGAAATGCTAGAGAGAAAATTGAAGCAAGGATGCAATAGAGACGTTTTATACAATGCTTTTTATGATTTGGACGACAGTGATCACAGTTATTCTGAAAGCAAGGCAACTAATGCAGCAAAGTTTGTCTCATGGAGCATCGAGTCCAAAATTGTCCAAAATGCTAGAAGTATTGGCGGAGCATTTCAGACTGCTCCAAAACAGCTGATGACATCTTTGGATGAGGTTGCAGAAACCAATGATCCGCAAAACTCCAGGGTATTTATCTTCTCCAATTACAGAGAAAGTGTCAGGGATATATTGAATGCACTTGAAGATATTGGGGAATTAGTCAAAGCTACCGAGTTTATTGGTCAAAGTTCAGCATTGTTGACATCTGCAACTCTTCCTCCTGAGCATATATTTGTAGGAAATGTCTTATTCTCCAGGAAAGCAATGAAAGGTCAGTCCCAAAAGGTTCAACAGGCTGTGCTGACGAAATTTAGGTCTGGCACCTATAATGTCATTGTTGCTACATCGATTGGTGAAGAAGGTCTTGATATCATGGAAGTTGATCTTGTCATATCTTTTGATGCTAATATTTCACCACTTAGAATGATTCAGCGAATGGGGAGAACTGGAAGAAAGCACGATGGACGATTTTCTAAAGAGCTACAAATTCCTCATGTCTTTAAACCAGAGGTTAAATATGTTGAGCTGTCCATTGAAAAATTTGTTCCTCGTCAAAAGAATGTGAAGGACATTGAGCTCCACAGTTCTCCATCAAAGGACAAACTCACTGTTGCTGAAATTGATTTACTTAGAACATATTTTCACCCTACTGGAGAAAACAATTGTAGAATGTCTCTTATTGCCTTTCCCCATTTTCAGACCTTTCCTTCTAGAGTGCATAAAGTGAAGCATTCATCTGGAACGTTGATGCTTATAGACATGATGCAGCGTTTGAAAGGAGTAGCATCATTTCCTGAAGATGACAAAGCTTCTTCACTTCAGGAAGATCTGTGTTTGGGACATAGTAAGCCAGTCATCACTGCCCAACTTGGTAAAGCTAGAAAGGACAATGAATCATGCTCTAGACATACACTGAGAAGGAATGTAGTCTCTGATAATTGTCTGGACCTGGATTCATGTCATTTGGGGATTCAAAGCAAAGACTTCGTCAATCTAGCTTGGCAAGATGGTACTTTATGTGATTTGGGTAAGAATCAAGAAGAAACATGTGAGGGTGATGAGACAATTCCCGAGACTCCAATTTCTAAGAGAAGTGTGTCAAATGAAGGAGATAATGGTGGTCAAATGGTAAATCCTATGGAGATTGAGATTTCTTCGTTGGTTGCAGATGCATGCATTAATGGCATGAAATATGAAGAACTTAGTCCACGTTTAACTAATTTGATTAAAAGTGGTGTTGTTCCAGAGTCTCCTATTGATGAAAGAGGTGGGTGTCTAAAAGGTGATAAAGTGACGGTGTACAATATTTTAGAGTAA 2586 0.408 MTSNNPYEIMDEEEFDWEAAAREIDVVCQMSSDTQGKGKQQSTLDKFVSIVNAKKETPTPQFQEDYQSPTFVHHIDEEAAKTWIYPVNVPLRDYQFHITESALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPQGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTVDMTGQLSPPKRAQFWKTKRVFFVTPQVLEKDIHSGTCLAKYLVCLVIDEAHRAMGNYAYCEAVRELMAVPLQLRILALTATPGSKQQTVQAVVDNLHISRLEYRSENDHDVISYVHNRKIELIQVAMGPEAVEINSKFMEVIRPIVARLSNIGVIQNRDYRTARQDLSHVNYEDVEGYFGVLITLYYIHKLLSSHGIRPAYEMLERKLKQGCNRDVLYNAFYDLDDSDHSYSESKATNAAKFVSWSIESKIVQNARSIGGAFQTAPKQLMTSLDEVAETNDPQNSRVFIFSNYRESVRDILNALEDIGELVKATEFIGQSSALLTSATLPPEHIFVGNVLFSRKAMKGQSQKVQQAVLTKFRSGTYNVIVATSIGEEGLDIMEVDLVISFDANISPLRMIQRMGRTGRKHDGRFSKELQIPHVFKPEVKYVELSIEKFVPRQKNVKDIELHSSPSKDKLTVAEIDLLRTYFHPTGENNCRMSLIAFPHFQTFPSRVHKVKHSSGTLMLIDMMQRLKGVASFPEDDKASSLQEDLCLGHSKPVITAQLGKARKDNESCSRHTLRRNVVSDNCLDLDSCHLGIQSKDFVNLAWQDGTLCDLGKNQEETCEGDETIPETPISKRSVSNEGDNGGQMVNPMEIEISSLVADACINGMKYEELSPRLTNLIKSGVVPESPIDERGGCLKGDKVTVYNILE 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00271 861 Gene3D - 87 281 IPR027417 -
Spst11g00271 861 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 98 266 IPR014001 -
Spst11g00271 861 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 434 612 IPR001650 -
Spst11g00271 861 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 106 578 IPR027417 -
Spst11g00271 861 CDD DEXDc_FANCM 89 270 IPR044749 GO:0005524
Spst11g00271 861 SMART ultradead3 87 287 IPR014001 -
Spst11g00271 861 Pfam Helicase conserved C-terminal domain 449 575 IPR001650 -
Spst11g00271 861 FunFam Fanconi anemia, complementation group M 86 281 - -
Spst11g00271 861 MobiDBLite consensus disorder prediction 783 797 - -
Spst11g00271 861 Gene3D - 427 586 IPR027417 -
Spst11g00271 861 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 10 580 - -
Spst11g00271 861 MobiDBLite consensus disorder prediction 773 797 - -
Spst11g00271 861 SMART helicmild6 471 576 IPR001650 -
Spst11g00271 861 Pfam Type III restriction enzyme, res subunit 104 248 IPR006935 GO:0003677|GO:0005524|GO:0016787
Spst11g00271 861 CDD FANCM_ID 298 375 IPR039686 GO:0006281|GO:0043138
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00271 Spst-Chr11 9476072 9485970 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00271 517 574 Eukaryotic Initiation Factors Gene Family AT3G13920 36.207 1.38e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g00271 K10896 - gmx:100820078 1308.51