Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00250 ATGTTCAAGAAGGCGGTGGAGGCCAAATCTCACCAGAGGCTCTCTGGTGCGGACAGAAAGAAGCTGAGACGAAGCATTAAGGACAAATTCCAAAGGGTTTCTGATTCCGACTTAGACGCCTTGCTTCCTCCCAAGGCAGAGGTTGCAGTGGCCAAGTTTCAAAACCGTGTCTATGTCTATGCTGTGGAGGGAGGCTTTCCAATGTTCTTTGACGTTGATGGCCGCGGCTATGACATTTTCCCAACAGTTTATGCTCTGTGGATTGTCCCTGAGCTTCTCCCTGCGTTCGTGCTCAAGGGGGGTGAGGTGTCCCGGTTTGTTATTGGAGGCGCAGACTTGATGTTCCCGGGTATAACTGTGCCTCCCCAAGGTCTTCCTTCGTTTCTGCCAGGGGAACCTTGGGCCGTTAAAGTACCCGGAAATCCTGCTCCCATTGCAGTTGGGAGTACCACCATGAGCAGCGCCGAAGCATTAAAAGCTGGATTGCGTGGAAAGGCGCTAAGAATAACTCATTACTATCGTGATCTGCTTTGGGAATCTGCCGAAGGCCGTTACGTGCCTAATGCAGGTTTTTTCGAAGATGTTGTGCTTGAGGATCCTTCTTCGTTACAAGCTTCTCATGATTCTGATTTCACTGAGGTTGCTGGTGAGACATCAATTGATCAGCATAACAACCCAAAAAGTGACGATGCGGCAGAATCTCTGGATGTAAATGAGTTAAAACCTGACTCCACCTCTGCATTTTCGCCATCGAATACTGATGAAAATGATGCTGCAACCGTAGTAACTGAAGGTGTGGCTGATTTGAAGTTACCGGATACCGCCTCTGCAAATGACCCTAATGACCAACAGATTCTATCAACTGCAGATATAGATTCCCTGTTAGATAAGTGCCTCTTACAAGCTTTGCACACAACAGTGAAGGACAAAGACCTTCCATTGCCTGGAAGCACTCTATGGTCGAACCATGTATTGCCATGTAGACCTTCAGGAATTACTCTAGATATCAAGAAATCTTCCTACAAAAAGTTATCAAAGTGGTTACAAGCAAAATCCTCCTCTGGCTTGATATCAGTGAAAGAAGATAAACACAAAAAGGAAGTCATGCTATTTTCAGTAAACCGAAACCATGCTGATTATTCATCTTTTAAGCCTGAAAAAAGACGAGTTGAGAAAAGTGAGCAGCCCAGTGTTCAGTCTGCCAATGAACTTCATTCGTCCAAAACTCTGGAAGTGGCCGAAATCTACAAGCCAAGTGTACATGTCAACTCTATATTTTCGTCTGTAGGAGCTGACCCTGGGAAACTTTATAGTGCTTCTGAAGCTACTGATATTGTCTTCACTTATGTTGAAAAAGAAAATCTTGTGAAACCAACAAATAAATCTATTGTAGTTCTTGATGTACTATTATGTGATGCACTGTTCAAGGGGGCTATAAAAAAAGGAACAACTTATCCTACAGAAATTCACAAGAAGGATTTAGGATCAACATTTGTGAGTCGAATGCAGCCTCACCATGTTGTGACAAGAGGGAATGAATCTGTAGTTCGTAAAGGTGCACTTAAAACAATTCAGTTATTGACAGAACGTCGGCAGGGCAACAAGAAGGTAACCAAACTCTCTGGGATGGAAACTTTTCTTATAGATGCCGAAGCATTGGCGTCAGAACTGCAGAAGAAGTTTGCGTGCAGTACCTCTGTTGCAGAACTACCAGGTAAAAAGGGGTATGAGGTTTTGGTTCAAGGAGGAGTTATCGATGACTTGGCTAGGCATTTGATTGAACAATATGGAGTTCCAAAGAGATACATTGAAGTTCTTGACAAAACCAAGAAATGA 1836 0.4385 MFKKAVEAKSHQRLSGADRKKLRRSIKDKFQRVSDSDLDALLPPKAEVAVAKFQNRVYVYAVEGGFPMFFDVDGRGYDIFPTVYALWIVPELLPAFVLKGGEVSRFVIGGADLMFPGITVPPQGLPSFLPGEPWAVKVPGNPAPIAVGSTTMSSAEALKAGLRGKALRITHYYRDLLWESAEGRYVPNAGFFEDVVLEDPSSLQASHDSDFTEVAGETSIDQHNNPKSDDAAESLDVNELKPDSTSAFSPSNTDENDAATVVTEGVADLKLPDTASANDPNDQQILSTADIDSLLDKCLLQALHTTVKDKDLPLPGSTLWSNHVLPCRPSGITLDIKKSSYKKLSKWLQAKSSSGLISVKEDKHKKEVMLFSVNRNHADYSSFKPEKRRVEKSEQPSVQSANELHSSKTLEVAEIYKPSVHVNSIFSSVGADPGKLYSASEATDIVFTYVEKENLVKPTNKSIVVLDVLLCDALFKGAIKKGTTYPTEIHKKDLGSTFVSRMQPHHVVTRGNESVVRKGALKTIQLLTERRQGNKKVTKLSGMETFLIDAEALASELQKKFACSTSVAELPGKKGYEVLVQGGVIDDLARHLIEQYGVPKRYIEVLDKTKK 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00250 611 ProSiteProfiles Translation initiation factor SUI1 family profile. 524 596 IPR001950 GO:0003743|GO:0006413
Spst11g00250 611 Gene3D - 520 606 - -
Spst11g00250 611 MobiDBLite consensus disorder prediction 1 20 - -
Spst11g00250 611 FunFam Eukaryotic translation initiation factor 2D isoform A 1 186 - -
Spst11g00250 611 Gene3D - 1 185 - -
Spst11g00250 611 Pfam Pre-PUA-like domain 2 90 IPR041366 -
Spst11g00250 611 Pfam Translation initiation factor SUI1 522 599 IPR001950 GO:0003743|GO:0006413
Spst11g00250 611 SUPERFAMILY PUA domain-like 103 179 IPR015947 -
Spst11g00250 611 CDD eIF2D_C 524 606 IPR039759 -
Spst11g00250 611 ProSiteProfiles PUA domain profile. 93 174 - -
Spst11g00250 611 MobiDBLite consensus disorder prediction 382 404 - -
Spst11g00250 611 FunFam eukaryotic translation initiation factor 2D 521 605 - -
Spst11g00250 611 SUPERFAMILY eIF1-like 489 607 IPR036877 GO:0003743|GO:0006413
Spst11g00250 611 CDD PUA_eIF2d-like 92 174 - -
Spst11g00250 611 SUPERFAMILY SWIB/MDM2 domain 408 508 IPR036885 -
Spst11g00250 611 MobiDBLite consensus disorder prediction 203 222 - -
Spst11g00250 611 MobiDBLite consensus disorder prediction 239 258 - -
Spst11g00250 611 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2D 1 611 IPR039757 GO:0001731|GO:0003743
Spst11g00250 611 CDD eIF2D_N 9 81 - -
Spst11g00250 611 MobiDBLite consensus disorder prediction 203 234 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g00250 K15027 - gmx:100776835 1090.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst11g00250 11 8149906 8155163 Spst11g00250 11 8149906 8155163 ECH