Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00244 ATGTCATGGTTTATGAACTGGTGGAGGCTTAACATATTGAACCTCATTCACTTGAGGTTTACCATGTGGTGGCTTGTGAACTGGAAGAGGCTTCACATATTGACCTTCGTTCAGAGGAGGCTTACTATATGGTCTAAATCCAATGGTCCTTTTCTGTCAAAGGTTCAAAGGTTGGTGTGGAATTTCAATAGTTCTGTTGTGTTGTGTAGGGGATTTTGTCTTGTTAGATTGCAAAGTTTGAAAATAGATGTGTCGCGAGGGCCAAAGTTCTACACTGCACATAGCAAAGTGGGGGGAGCACCAATCCTCTGCATTGCGATCACCTACGCCACCAAAACGCATCTCCAGTCACCTACTGCCACCGTTGAAAGATTGAGGAAGAAGCACATTGAGATGGAAAGAGAGTTGCAGAGAGGGTACGTGAAGAAGGGGCCATGGAGTAGTGAGGAAGATGAAGTGCTGCTGAGACACGTGAGCAAGTGTGGTCCAAGGGAGTGGAGCTCCATTCGATCCAAAGGCTTGTTGCCACGAACAGGAAAATCCTGTCGCCTTAGATGGGTTAACAAACTTAGACCAAACTTGAAGACTGGATCCAAGTTTACAGCAGAAGAAGAGAGATTGGTGATAGAATTACAGGAAGAGTTTGGGAACAAATGGGCCAAAATTGCAACGTATTTGCCAGGGAGAACGGACAATGATGTGAAAAACTTCTGGAGCAGTAGGAGAAAGAGGTTGGAGAGGATGTTGCAGAAGCCACCAACGTTAAAGCCGCACAGAAACGAGGAAAAACCTCCTCTTACTCAAGTGCCAGTGGATAAGGTTCCTCCATGCAGTTCCAATCAGGTGGAGGCAAACCTTTCTTACCCTACTTCCTACATGGGAAACACCGAGGTGTTCGAGATGATCAACCTACCAGATTTGATAAAGCCAAACTATCAAGAGATAGAAAATGATTACTTGAGTGCAGTCGAGGTTGAGGCCACCCCACTTCACGCAGTGCCATCGTTTGAGTCTTCGTCAGGGTACCACTTCCCTCTACTCCCTGAGCCACTAATCGACTTTCCACTATTCCCACAGTGCCAGGACCTTGTTGCAGAGTCCTTTGATCCAAATTTTATTGTTGAGTTCGAGGAGAAGAAATGTTCAGAGCTTGGGACCGGGTTGCCAACTCTTGGATTCGAGGGAAATTCTCAAATTACAAGTTCAAATGGATTATTTAAGGACTTCTCAAATGAGATTTTTGAATATTTTGAGCATGTTCCAACCTCAACACAACAATAA 1281 0.4496 MSWFMNWWRLNILNLIHLRFTMWWLVNWKRLHILTFVQRRLTIWSKSNGPFLSKVQRLVWNFNSSVVLCRGFCLVRLQSLKIDVSRGPKFYTAHSKVGGAPILCIAITYATKTHLQSPTATVERLRKKHIEMERELQRGYVKKGPWSSEEDEVLLRHVSKCGPREWSSIRSKGLLPRTGKSCRLRWVNKLRPNLKTGSKFTAEEERLVIELQEEFGNKWAKIATYLPGRTDNDVKNFWSSRRKRLERMLQKPPTLKPHRNEEKPPLTQVPVDKVPPCSSNQVEANLSYPTSYMGNTEVFEMINLPDLIKPNYQEIENDYLSAVEVEATPLHAVPSFESSSGYHFPLLPEPLIDFPLFPQCQDLVAESFDPNFIVEFEEKKCSELGTGLPTLGFEGNSQITSSNGLFKDFSNEIFEYFEHVPTSTQQ 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00244 426 Pfam Myb-like DNA-binding domain 146 197 - -
Spst11g00244 426 CDD SANT 145 190 IPR001005 -
Spst11g00244 426 PANTHER TRANSCRIPTION FACTOR DUO1 135 425 - -
Spst11g00244 426 MobiDBLite consensus disorder prediction 250 266 - -
Spst11g00244 426 CDD SANT 199 238 IPR001005 -
Spst11g00244 426 ProSiteProfiles Myb-like domain profile. 198 242 IPR001005 -
Spst11g00244 426 FunFam Transcription factor GAMYB 198 267 - -
Spst11g00244 426 Pfam Myb-like DNA-binding domain 198 239 IPR001005 -
Spst11g00244 426 FunFam MYB transcription factor 143 195 - -
Spst11g00244 426 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 191 246 IPR017930 -
Spst11g00244 426 MobiDBLite consensus disorder prediction 250 274 - -
Spst11g00244 426 ProSiteProfiles Myb-like domain profile. 138 190 IPR001005 -
Spst11g00244 426 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 141 186 IPR017930 -
Spst11g00244 426 Gene3D - 142 195 - -
Spst11g00244 426 SUPERFAMILY Homeodomain-like 141 238 IPR009057 -
Spst11g00244 426 SMART sant 142 192 IPR001005 -
Spst11g00244 426 SMART sant 196 244 IPR001005 -
Spst11g00244 426 Gene3D - 198 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00244 Spst-Chr11 7916934 7922437 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00244 135 250 MYB Transcription Factor Family AT3G60460 77.586 1.85e-59 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst11g00244 Myb_DNA-bind_6 1.1e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g00244 K09422 - gmx:121173231 473.396