Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00238 ATGACGACTCGAATTGCCCCCGGTGTGGGAGCCAATTTGCTCGGCCAACACGCAGCTGAGAGGAATCAAGACGCCACTGCTTATGTCGGCAATCTCGACCCTCAGATTAGCGAGGAGTTATTGTGGGAGTTGTTCGTTCAGGCGGGTCCAGTGGTTAATGTCTACGTTCCGAAGGACAGAGTGACCAACCAACATCAGGGTTATGGATTTGTTGAATTCCGGAGTGAAGAAGATGCTGACTATGCCATCAAGGTTCTAAACATGATTAAGCTTTATGGGAAACCGATCCGTGTGAATAAGGCATCTCAAGATAAAAAGAGCTTGGATGTTGGTGCAAACCTTTTCATCGGCAATCTTGATCCTGATGTAGATGAGAAGCTCTTGTATGATACTTTCAGTGCATTTGGGGTTATTGTTACTAATCCAAAGATCATGAGAGATCCTGAGACAGGAAATTCTCGTGGTTTTGGCTTCATCAGCTATGATTCATTTGAGGCATCTGATTCGGCCATTGAGGCGATGAATGGACAGTATCTTTGCAATCGTCAAATTACAGTGTCATATGCTTATAAGAAAGACACTAAGGGCGAACGGCATGGTACCCCTGCAGAAAGAGTTTTGGCTGCAAGTAATCCAACTGCACAGAAGAGCAGGCCTCATACTTTATTTGCCAGTGGACCTCCAACACTTCCCAGTGTTCCTCAGGCTAATGGGGTTGCTCCAGTGCCTCCCCGTCCCTTTGCCAATGGGGTCGCTCCTGGTTCGATTCCTGCCCTCCGTCCACCACCCCCTCAAGCTGCTGCATTCCAGCCTATGCCGGTGCCTGGACAACCAACCTGGCATCAGCAACAGCCAGGTCAAACAATCTTACCACCGGCAATGCCACCTCCACCTCAAGTTCAGCAGTTCAGGCCACCGCACCCTGGTATGCAGCAGATGCCACCACCTCCGCAAGCTCCTCCCAGGCCTCTTCCACCACCTGCAATAATGGCAAGTCAGCCACCACCTGTTTGGCGTCCACCACCACCTCAGCATCAGGGTGGACGGCCTATGCCATACCCTCAGTCTATGCCCCCGCCACCACCTCCCCAGTAA 1095 0.5096 MTTRIAPGVGANLLGQHAAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPETGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPTAQKSRPHTLFASGPPTLPSVPQANGVAPVPPRPFANGVAPGSIPALRPPPPQAAAFQPMPVPGQPTWHQQQPGQTILPPAMPPPPQVQQFRPPHPGMQQMPPPPQAPPRPLPPPAIMASQPPPVWRPPPPQHQGGRPMPYPQSMPPPPPPQ 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00238 364 CDD RRM1_SF3B4 28 100 IPR034158 -
Spst11g00238 364 Gene3D - 16 110 IPR012677 -
Spst11g00238 364 MobiDBLite consensus disorder prediction 251 364 - -
Spst11g00238 364 CDD RRM2_SF3B4 111 193 IPR034159 -
Spst11g00238 364 PANTHER SPLICING FACTOR 3B SUBUNIT 4 14 359 - -
Spst11g00238 364 MobiDBLite consensus disorder prediction 289 364 - -
Spst11g00238 364 FunFam Splicing factor 3b subunit 4 16 108 - -
Spst11g00238 364 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 191 IPR000504 GO:0003723
Spst11g00238 364 MobiDBLite consensus disorder prediction 251 271 - -
Spst11g00238 364 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 103 IPR000504 GO:0003723
Spst11g00238 364 FunFam splicing factor 3B subunit 4 109 200 - -
Spst11g00238 364 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 184 IPR000504 GO:0003723
Spst11g00238 364 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 97 IPR000504 GO:0003723
Spst11g00238 364 SUPERFAMILY RNA-binding domain, RBD 25 195 IPR035979 GO:0003676
Spst11g00238 364 Gene3D - 111 200 IPR012677 -
Spst11g00238 364 SMART rrm1_1 26 99 IPR000504 GO:0003723
Spst11g00238 364 SMART rrm1_1 113 187 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00238 Spst-Chr11 7882784 7887387 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00238 16 98 Eukaryotic Initiation Factors Gene Family AT4G34110 37.349 1.73e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g00238 K12831 - gmx:100791039 606.29