Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00235 ATGAACAACATAAATAATGGTGCAGCTGGAAGAAGTTTAAGGGGAATTGACGTGAACACGGTGCCGGCGGAAGTGGCGGTGACGGTGGCAATGACAACAGATCTGGAGGAAGCAGCAGCGGTGTCACCGTCTTCAAACAGTGCAGCAGCATGGTTTCAGTTGGATCTCTGCATATTCAATAGAGGAAGAAGTGTGAGTGGTGAGGATGGTGATGAAAGGCAAATGGCTTATTCTAAAGGAAGCGACGAGGATAACAATGGTGATGGTGGTGGTGACTGTGACGATGGCAGCGCAAGGAAGAAGCTGAGACTCTCAAAGGAACAATCTGGTTTCCTTGAAGAGAGTTTCAAAGAGCACAACACTCTGAACCCTAAGCAAAAGCTGGCTCTTGCGAAACAGCTCGATCTTCGTCCACGCCAAGTAGAAGTATGGTTCCAGAACAGAAGAGCAAGTGATGGATTGGATGGGTGGATGCATGCATGCAGGAGCAAGTTGAAGCAGACAGAGGTGGAGTGTGAGTACATGAAGAGGTGTTGTGAGACACTGAGAGAAGAGAACAGAAGGCTTGAGAAGGAGCTTCAAGAGTTGAGGGTTTTGAAGACTTTAAACCCATTCTGCATGCACTCACCACCAACAACCTTGACCATGTGTCCTTCCTGTGAACTTGTTGCCACCAATTCCACCACCACCACCAGTAATGCATCATCCAATACTGTTACTGTCAAAACCATTCACCAACCCACCACCCCACAAAATCTAAAAGGGTTTGTCTAA 774 0.4742 MNNINNGAAGRSLRGIDVNTVPAEVAVTVAMTTDLEEAAAVSPSSNSAAAWFQLDLCIFNRGRSVSGEDGDERQMAYSKGSDEDNNGDGGGDCDDGSARKKLRLSKEQSGFLEESFKEHNTLNPKQKLALAKQLDLRPRQVEVWFQNRRASDGLDGWMHACRSKLKQTEVECEYMKRCCETLREENRRLEKELQELRVLKTLNPFCMHSPPTTLTMCPSCELVATNSTTTTSNASSNTVTVKTIHQPTTPQNLKGFV 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00235 257 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 36 242 - -
Spst11g00235 257 FunFam Homeobox-leucine zipper protein HAT22 103 149 - -
Spst11g00235 257 Coils Coil 172 202 - -
Spst11g00235 257 Gene3D - 105 151 - -
Spst11g00235 257 MobiDBLite consensus disorder prediction 67 98 - -
Spst11g00235 257 SMART halz 166 209 IPR003106 GO:0006355|GO:0043565
Spst11g00235 257 Pfam Homeodomain 99 150 IPR001356 GO:0003677
Spst11g00235 257 ProSiteProfiles 'Homeobox' domain profile. 95 155 IPR001356 GO:0003677
Spst11g00235 257 SMART HOX_1 97 159 IPR001356 GO:0003677
Spst11g00235 257 CDD homeodomain 99 150 IPR001356 GO:0003677
Spst11g00235 257 Pfam Homeobox associated leucine zipper 166 198 IPR003106 GO:0006355|GO:0043565
Spst11g00235 257 SUPERFAMILY Homeodomain-like 86 150 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00235 Spst-Chr11 7867832 7868743 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00235 6 226 Homeobox Transcription Factor Family AT2G44910 51.055 2.51e-62 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Spst11g00235 Homeodomain 9.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g00235 K09338 - vvi:100256230 193.356