Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00232 ATGTCACAGCGAGGTACTGCAGAAGAAAAAACCGCAAAATTCGATCCGATTTATCGTAATCGATTAGTTAACATGTTGATTAACCGTATTCTGAAACATGGAAAAAAATCATTGGCTTATCAAATTATCTATCGAGCTATGAAAAAGATTCAACAAAAGACAGAAACAAATCCACTATCTGTTTTACGTCAAGCAATACGTGGAGTAACTCCCGTTGAAATAGGATCCGCACAAGGAAAAGCACTTGCCATTCGTTGGTTATTGGGGGCATCCCGAAAACGTCTGGGTCGAAATATGGCTTTCAAATTAAGTTCTGAATTAGTGGATGTTGTCAAAGGTAGTGGTGATGTCATACGCAAAAAGGAAGAGACTCATAGAATGGTAGAGGCAAATAGAGCTTTTGCACATTTTCGTTAA 417 0.3813 MSQRGTAEEKTAKFDPIYRNRLVNMLINRILKHGKKSLAYQIIYRAMKKIQQKTETNPLSVLRQAIRGVTPVEIGSAQGKALAIRWLLGASRKRLGRNMAFKLSSELVDVVKGSGDVIRKKEETHRMVEANRAFAHFR 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00232 138 PIRSF RPS7p_RPS7a_RPS5e_RPS7o 69 138 IPR000235 GO:0006412
Spst11g00232 138 PIRSF RPS7p_RPS7a_RPS5e_RPS7o 2 73 IPR000235 GO:0006412
Spst11g00232 138 ProSitePatterns Ribosomal protein S7 signature. 20 46 IPR020606 GO:0003723|GO:0003735|GO:0006412
Spst11g00232 138 PANTHER RIBOSOMAL PROTEIN S7 5 132 IPR000235 GO:0006412
Spst11g00232 138 Pfam Ribosomal protein S7p/S5e 1 72 IPR023798 -
Spst11g00232 138 Pfam Ribosomal protein S7p/S5e 70 132 IPR023798 -
Spst11g00232 138 CDD uS7_Chloroplast 10 137 - -
Spst11g00232 138 SUPERFAMILY Ribosomal protein S7 4 135 IPR036823 -
Spst11g00232 138 NCBIfam 30S ribosomal protein S7 4 138 IPR005717 GO:0003735|GO:0006412|GO:0015935
Spst11g00232 138 Gene3D Ribosomal protein S7 domain 72 138 IPR036823 -
Spst11g00232 138 Gene3D Ribosomal protein S7 domain 1 71 IPR036823 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00232 Spst-Chr11 7823642 7824058 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00232 16 132 Cytoplasmic Ribosomal Protein Gene Family AT2G37270 33.813 4.88e-08 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g00232 K02992 - cave:30215261 244.202