LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst11g00229	ATGGGGGATAAGCTTCATCGTCGAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATAAAGGAGATGAACAGGGATAAGCGATCTGCCGAAGCTGTGGGATGTCAAAGTGAATCAGTAGGGGAGCGTTCCGCCTTAGAGGGAAGGACTCGCGCGAGTAGTGTTGGACGAAGCGGAAGCGAGAATGTCGGCTTGAGTAACACAAACATTGTTTGGGAAGAGGTTTTGATTGATCAAAAAGAAGAATCTACTTCAACCGATATGCCCTTAGGCACGGCCATACATAACATAGAAATCACACTCGGAAAGGGTGGACAATTAGCTAGAGCAGCTGGTGCTGTAGCGAAACTAATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAACTGCTCGGCAACAGTCGGACAAGTGGGAAATGTTGGGGTAAACCAGAAAAATTTAGGTAGAGCCGGATCTAAATGTTGGCTAGGTAAGCGTCCTATAGTAAGAGGAGTAGTTATGAACCCTGTAGACCATCCGCATGGGGGTGGTGAAGGGAGGGCCCCAATTGGTAGAAAAAACCCGCAACTCCTTGGGGTTTTCCTGCACTTGGAAGAAGAAGTAGAAAAAGGAAGAAATATAGTGATAATTTGA	684	0.4708	MGDKLHRREGNSPDHQLRPLNDRSVIKEMNRDKRSAEAVGCQSESVGERSALEGRTRASSVGRSGSENVGLSNTNIVWEEVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKNLGRAGSKCWLGKRPIVRGVVMNPVDHPHGGGEGRAPIGRKNPQLLGVFLHLEEEVEKGRNIVII	227

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst11g00229	227	MobiDBLite	consensus disorder prediction	1	69	-	-
	Spst11g00229	227	Gene3D	-	46	155	IPR014722	-
	Spst11g00229	227	ProSitePatterns	Ribosomal protein L2 signature.	177	188	IPR022671	GO:0003735\|GO:0005840\|GO:0006412
	Spst11g00229	227	MobiDBLite	consensus disorder prediction	1	38	-	-
	Spst11g00229	227	SUPERFAMILY	Translation proteins SH3-like domain	93	212	IPR008991	-
	Spst11g00229	227	FunFam	50S ribosomal protein L2	155	223	-	-
	Spst11g00229	227	Pfam	Ribosomal Proteins L2, C-terminal domain	93	205	IPR022669	GO:0003735\|GO:0005840\|GO:0006412
	Spst11g00229	227	Gene3D	Ribosomal protein L2, domain 3	156	227	IPR014726	-
	Spst11g00229	227	PANTHER	RIBOSOMAL PROTEIN L2	90	205	IPR002171	GO:0003735\|GO:0005840\|GO:0006412
	Spst11g00229	227	SMART	Ribosomal_L2_C_2	93	212	IPR022669	GO:0003735\|GO:0005840\|GO:0006412
	Spst11g00229	227	FunFam	50S ribosomal protein L2, chloroplastic	79	155	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst11g00229	Spst-Chr11	7809996	7812375	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst11g00229	93	194	Cytoplasmic Ribosomal Protein Gene Family	AT3G51190	43.363	7.72e-20	83.6

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst11g00229	K02886		-	csin:14412516	253.062