Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00212 ATGTTGGCTTTCATGGTTGGTTCAAAGCAAGCTTTTGAGGTGTCTTTAGCAGATGTCTCTCAAACTCAGCTTCAAGGGAAGAATGATGTGATCTTGGAGTTTCACGTGGATGACACAACTGGAGCTAATGAGAAAGATTCACTGATGGAGATAAGTTTCCATATACCAAGTTCCAACACCCAGTTTGTTGGTGATGAAAAAACTCCTCCTGCTGAGGTTTTCCGCAGCAGAATAATGTCCATGGCTGATGTTGGCGCTGGAGGTGAAGATGCTGTTGTTACATTTGAGGGTATTGCGATCCTTACACCAAGAGGGCGATACATTGTCGAGTTACACATGTCATTCTTGCGGCTTCAGGGACAGGCTAATGATTTCAAAATCCAGTATAGCAGTGTGGTTCGCTTATTTTTACTTCCTAAGTCTAATCAACCACATACCTTCGTCATTATTACTCTTGATCCCCCTATTCGGAAGGGACAAACTTTGTACCCTCATATTGTGATGCAGTTTGAATCTGATTATGTTGTCCAAAGTGAATTGACAATTAATGAAGATCTTTATAACACAAAGTACAAGGACAAGTTAGAGCTATCTTATAAGGGGCTTATTCATGAAGTATTCACCACAATATTACGTGGCTTGTCTGGTGCCAAAGTGACTAAGCCTGGAAAATTTAGGAGTTGTCAAGATGGTTATGCTGTGAAATCATCTTTGAAAGCTGAAGATGGAATTCTGTATCCGCTTGAGAAGAGCTTCTTCTTTCTACCTAAGCCTCCGACTCTTATTCTTCATGAAGAGATTGACTATGTGGAGTTTGAGAGGCATGCTGCTGGTGGTTCCAATATGCATTATTTTGACCTTCTTATCAGACTAAAATCTGAACAAGAGCATCTCTTCCGTAATATTCAGAGAAATGAGTACCACAATTTGTATGAATTTATTAGTTCAAAGGGCTTGAAAATTATGAACTTGGGAGATGGCCAACCCACTGTTGGTATAAAGAAGGTTCTCGAGAATGACGATGATGATGCTGTTGACCCACATCTTGAGCGCATAAAAAATGCAGCTGGTGACGATGAAAGTGATGAGGAGGATTCAGATTTTGTTGCTGATAAGGATGATGAAGGTTCTCCTACTGATGATTCTGGGGCAGACGATTCTGATGCCAGTAAAAGTGGCGATGAGAAAGAGAAGCCCGCCAAGAAGGAAATAAAGAAGGACCTGCCTCCTAAGGCATCTACTTCTAAAAAGAAATCAAAAGATGACGATGATGGAAAAAAGAAAAAACAGAAGAAGAAAAAAGACCCAAATGCACCCAAGAGGGCAATGTCCGGTTTCATGTTCTTTTCTAAATTGGAAAGAGAGAATCTCAAGAAAACTAATCCTGGAATTTCATTTACGGATGTTGGAAGAGTACTTGGAGAGAAATGGAAAAAAATGTCAGCGGAAGAGAAGGAACCATACGAGGCAAAAGCACGTGAAGATAAACAACGTTACAAGGATGAGATTAGTGACTACAAGAATCCCCAACCCATGAATATTGATTCAGGAAATGTATCTGACAGTGACTGGAATGTGCTCGAGAGTTTTGTGCCTTTCGGGGTTGAAACCTCAGTTGGTTTGCATGGCTTTAAGGGAAGTCAGGGGAAGGATGACCTTGCTTTGTTGACCAGTGAGAAAAACACGGCTAAATCCTATCCCTCTCAGCAGAATAGGTTGCAGGGTGACACGAGCGAGGAGAAGAGTGGGGAAGAAGCGTGCGAGGCACACGTTATCCTTTCCATACGCGTCTCTACGACGTCCATATTCCATCTCCCCTTTCATTACCAACCTCTCATCTCTCTTTTACAAATCCTCTCTCTCTCTCTCTCTCTCATTTCTCATCTCAACAATCTTCACCACCCTCTCTGTTTCTCTCTCTTTTCGTCGTTTTCACCAAAACGCACAATTATGGCTCAGAAGGCCGAGAAAAACGACACCGACTTCAAGGTCCCCGAACCAATCACCCCCTGCGCAACCACCACAACCACCGCAGCCTCCATTTCCGAACCTTCTAGATTCTTCGACGCCGCCACTCCCGCCACGTCGTCGCGGTCGCCCAAGCGCTCGCTCCCGCTCGAGGACGCTGCCACCGCGGACCGGACGGCCACATCGGAGCCCAAGCGCGCGGTGAACCGGTGCTCCGGTTGCCGGAGGCGCGTTGGCCTGACTGGATTTCGGTGCCGGTGCGGGGACCTCTTCTGCGCCGAGCACCGGTACTCTGATCGCCACGACTGTTCCTACGACTACAAGGCCGCCGGGAGAGAGGCCATCGCCAGGGAGAATCCCGTCGTGAAGGCGGCGAAGATCGTCAAGGTCTGA 2361 0.4579 MLAFMVGSKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPSSNTQFVGDEKTPPAEVFRSRIMSMADVGAGGEDAVVTFEGIAILTPRGRYIVELHMSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVIITLDPPIRKGQTLYPHIVMQFESDYVVQSELTINEDLYNTKYKDKLELSYKGLIHEVFTTILRGLSGAKVTKPGKFRSCQDGYAVKSSLKAEDGILYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKSEQEHLFRNIQRNEYHNLYEFISSKGLKIMNLGDGQPTVGIKKVLENDDDDAVDPHLERIKNAAGDDESDEEDSDFVADKDDEGSPTDDSGADDSDASKSGDEKEKPAKKEIKKDLPPKASTSKKKSKDDDDGKKKKQKKKKDPNAPKRAMSGFMFFSKLERENLKKTNPGISFTDVGRVLGEKWKKMSAEEKEPYEAKAREDKQRYKDEISDYKNPQPMNIDSGNVSDSDWNVLESFVPFGVETSVGLHGFKGSQGKDDLALLTSEKNTAKSYPSQQNRLQGDTSEEKSGEEACEAHVILSIRVSTTSIFHLPFHYQPLISLLQILSLSLSLISHLNNLHHPLCFSLFSSFSPKRTIMAQKAEKNDTDFKVPEPITPCATTTTTAASISEPSRFFDAATPATSSRSPKRSLPLEDAATADRTATSEPKRAVNRCSGCRRRVGLTGFRCRCGDLFCAEHRYSDRHDCSYDYKAAGREAIARENPVVKAAKIVKV 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00212 786 SUPERFAMILY AN1-like Zinc finger 714 780 IPR035896 -
Spst11g00212 786 CDD PH1_SSRP1-like 90 223 - -
Spst11g00212 786 ProSiteProfiles Zinc finger AN1-type profile. 721 767 IPR000058 GO:0008270
Spst11g00212 786 Pfam HMG (high mobility group) box 439 507 IPR009071 -
Spst11g00212 786 CDD PH2_SSRP1-like 225 324 - -
Spst11g00212 786 Gene3D - 222 330 IPR011993 -
Spst11g00212 786 MobiDBLite consensus disorder prediction 690 718 - -
Spst11g00212 786 PANTHER FACT COMPLEX SUBUNIT SSRP1 1 492 - -
Spst11g00212 786 FunFam FACT complex subunit SSRP1 222 330 - -
Spst11g00212 786 Pfam AN1-like Zinc finger 727 764 IPR000058 GO:0008270
Spst11g00212 786 SUPERFAMILY PH domain-like 89 323 - -
Spst11g00212 786 SMART AN1_Zf_4 727 764 IPR000058 GO:0008270
Spst11g00212 786 SUPERFAMILY HMG-box 426 508 IPR036910 -
Spst11g00212 786 Gene3D - 1 62 IPR038167 -
Spst11g00212 786 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 439 507 IPR009071 -
Spst11g00212 786 Gene3D - 702 782 IPR035896 -
Spst11g00212 786 SMART hmgende2 438 508 IPR009071 -
Spst11g00212 786 MobiDBLite consensus disorder prediction 561 581 - -
Spst11g00212 786 FunFam FACT complex subunit SSRP1 1 62 - -
Spst11g00212 786 MobiDBLite consensus disorder prediction 384 430 - -
Spst11g00212 786 Pfam Structure-specific recognition protein (SSRP1) 2 57 IPR024954 -
Spst11g00212 786 Gene3D High mobility group box domain 422 516 IPR036910 -
Spst11g00212 786 MobiDBLite consensus disorder prediction 352 447 - -
Spst11g00212 786 MobiDBLite consensus disorder prediction 561 576 - -
Spst11g00212 786 Pfam Histone chaperone Rttp106-like 233 322 IPR013719 -
Spst11g00212 786 FunFam FACT complex subunit SSRP1 423 516 - -
Spst11g00212 786 FunFam Zinc finger AN1-type containing 6 703 782 - -
Spst11g00212 786 SMART Rtt106_2 231 324 IPR013719 -
Spst11g00212 786 FunFam Fact complex subunit ssrp1 82 221 - -
Spst11g00212 786 CDD HMG-box_AtSSRP1 436 510 - -
Spst11g00212 786 Gene3D - 82 221 - -
Spst11g00212 786 PRINTS Structure-specific recognition protein signature 239 257 IPR000969 GO:0003677|GO:0005634
Spst11g00212 786 PRINTS Structure-specific recognition protein signature 257 274 IPR000969 GO:0003677|GO:0005634
Spst11g00212 786 PRINTS Structure-specific recognition protein signature 299 317 IPR000969 GO:0003677|GO:0005634
Spst11g00212 786 PRINTS Structure-specific recognition protein signature 124 140 IPR000969 GO:0003677|GO:0005634
Spst11g00212 786 PRINTS Structure-specific recognition protein signature 283 299 IPR000969 GO:0003677|GO:0005634
Spst11g00212 786 PRINTS Structure-specific recognition protein signature 147 163 IPR000969 GO:0003677|GO:0005634
Spst11g00212 786 PRINTS Structure-specific recognition protein signature 102 118 IPR000969 GO:0003677|GO:0005634
Spst11g00212 786 PRINTS Structure-specific recognition protein signature 212 225 IPR000969 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00212 Spst-Chr11 7584063 7592915 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00212 699 786 C2H2 Transcription Factor Family AT3G52800 52.273 1.64e-27 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Spst11g00212 Rtt106 4.6e-20 CL0266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g00212 K09272 - gmx:100805034 911.753