Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00206 ATGACGGATCCTAAGTCCAATTTGTTCCATGAATGGTTCAACTACATGCTCCTCCACCCTCACTACTCTTCTTCATCCTCTTCTCAATCCTACCCTCTTGTCAATTACTCAAACAACAGGTTTGGAATTCAATTACAAGGAGCCTCATCTTCATCTTCATATGCAGCTCCTCCTCCTCCTCCTCCTTCCTCCCCTCCTCTCAGAGAGGCCCTTCCTCTCATCAACAAGATAAGCCTAACAAGTGACCAGCTCCAACAAAATGAATCCTCACCGAATGTTTTACTAGAGAAAGAAGGGAACAAGAAGGTGGAAAGCAACAAGCATGAGAGTGGAGAAGATGGTGTTGAAGAAAGTGTGACTGTTGCCCTACACATAGGGCTTCCCAGAATGGATACTTCTTCTGATCTGGGGTCATCAAGGGTAGTCTCAACTTGTATGGAAATGGGTGAAAAAGAGGAAGTGAACATAATTTCTGAACACCCTTTGGATAGATTGAACAAGGGCCAGTATTGGATTCCCACCCCTTCTCAGATTCTCATTGGTCCTACACAGTTCCCATGTCCTGTGTGCTCAAAAACTTTCAACAGATACAATAATCTTCAGATGCATATGTGGGGACATGGATCTCAATACAGAAAGGGGCCTGATTCTCTTAAAGGAACACAACCAACAGCTATGCTAAGGCTTCCATGCTTTTGTTGTGCACCAGGTTGCAAGCACAACATTGACCATCCAAGAGCAAGGCCACTCAAGGATTTCAGAACTCTTCAAACACATTACAAGAGAAAGCATGGCATAAAACCCTACATGTGCAGAAAGTGTGGCAAAGCATTTGCAGTAAAAGGTGACTGGAGAACTCACGAGAAGAACTGTGGCAAAATATGGTATTGTTTATGTGGGTCTGATTTCAAACACAAAAGGTCCCTAAAAGACCATATCAAGGCCTTTGGCTATGGCCATGGTGCTTTTGGCATTGATTGCTTGCAAGAAGAAGATGAAGCTGCTTCTGAAGTTGAACATGATGGGGAAAGTTCAATATGA 1041 0.4352 MTDPKSNLFHEWFNYMLLHPHYSSSSSSQSYPLVNYSNNRFGIQLQGASSSSSYAAPPPPPPSSPPLREALPLINKISLTSDQLQQNESSPNVLLEKEGNKKVESNKHESGEDGVEESVTVALHIGLPRMDTSSDLGSSRVVSTCMEMGEKEEVNIISEHPLDRLNKGQYWIPTPSQILIGPTQFPCPVCSKTFNRYNNLQMHMWGHGSQYRKGPDSLKGTQPTAMLRLPCFCCAPGCKHNIDHPRARPLKDFRTLQTHYKRKHGIKPYMCRKCGKAFAVKGDWRTHEKNCGKIWYCLCGSDFKHKRSLKDHIKAFGYGHGAFGIDCLQEEDEAASEVEHDGESSI 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00206 346 SUPERFAMILY beta-beta-alpha zinc fingers 253 289 IPR036236 -
Spst11g00206 346 FunFam Zinc finger protein WIP2 238 320 - -
Spst11g00206 346 MobiDBLite consensus disorder prediction 95 115 - -
Spst11g00206 346 PANTHER ZINC FINGER PROTEIN WIP2 36 340 IPR043584 GO:0003700|GO:0010468
Spst11g00206 346 MobiDBLite consensus disorder prediction 54 68 - -
Spst11g00206 346 ProSiteProfiles Zinc finger C2H2 type domain profile. 269 289 IPR013087 -
Spst11g00206 346 ProSitePatterns Zinc finger C2H2 type domain signature. 187 207 IPR013087 -
Spst11g00206 346 ProSiteProfiles Zinc finger C2H2 type domain profile. 185 212 IPR013087 -
Spst11g00206 346 Gene3D Classic Zinc Finger 184 207 - -
Spst11g00206 346 SUPERFAMILY beta-beta-alpha zinc fingers 181 207 IPR036236 -
Spst11g00206 346 MobiDBLite consensus disorder prediction 81 116 - -
Spst11g00206 346 Pfam C2H2-type zinc finger 185 204 - -
Spst11g00206 346 MobiDBLite consensus disorder prediction 48 69 - -
Spst11g00206 346 FunFam zinc finger protein WIP2-like 184 207 - -
Spst11g00206 346 Gene3D Classic Zinc Finger 248 319 - -
Spst11g00206 346 SMART c2h2final6 185 207 IPR013087 -
Spst11g00206 346 SMART c2h2final6 269 289 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00206 Spst-Chr11 7525810 7528242 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00206 1 339 C2H2 Transcription Factor Family AT3G57670 56.032 6.92e-126 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst11g00206 zf-C2H2_6 2.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g00206 - - gmx:100794446 602.053