Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00201 ATGAGGAAACCTGATCTGATGGCCAACAAGGACAAAATGAACCACATTAAGAGCAAGTTGAGAAAAGGGTTGTGGTCACCTGATGAAGATGAGAAGCTCATAAGGTACATGCTCACAAATGGACAAGGGTGTTGGAGCGACATTGCAAGAAATGCTGGTCTCCAAAGGTGTGGCAAAAGTTGCCGTCTTCGTTGGATTAATTACTTAAGACCTGACCTCAAGCGCGGTGCATTCTCACCCCAAGAGGAAGACCTCATCTTTCATTTGCATTCTATTCTTGGTAACAGGTGGTCTCAGATTGCAGCACGTCTCCCTGGTCGCACAGACAATGAGATAAAGAATTTTTGGAACTCAACATTAAAGAAAAGGATGAAAACCAACACTTCTACTCCCTCCCGAAACAACAGCACTGACTCGTCAGAGTCTAAAGATGTTTTGAGCGGGATCGTCCCATTTAATGAACATGACATCTTGACCATGTGCATGGATTCCTCTTCATCCATATCATCCATGCAAGCAATGGTTTTGCCTGACCAATTTGACCCTTTTTCCATGTTGGTAAATAATCAGAGTGACATGACTAATGTTTCAGCAGATTTTCCCAACATGCCTACTTCATGCATGACACAAATTGGCATGGTAGATGGGCACCAAGGGAAATATGGGACATTGGAGCCAAATAACAAAATGGGGTTAGGAAGAGACTTCTCCCTTCCTTCACTAGAAAGTAGAAGAAGCATTGAAAGCGATAGTGTTCCAATTGATGTGAAAAGCCATAACAACCACTTCAATTATGGTTCCTTCAACAACACTGATAAGATTCAAGGCTCCAAAGTGGAGGACTTAATTGGGTTTGGAAATCATGGCCAAGGAGAATTTTTTTTGGAGAATTTGATGCAAGACATAACCTCTTTTCCTTTCCTTGATTTTTAA 933 0.418 MRKPDLMANKDKMNHIKSKLRKGLWSPDEDEKLIRYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEDLIFHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKRMKTNTSTPSRNNSTDSSESKDVLSGIVPFNEHDILTMCMDSSSSISSMQAMVLPDQFDPFSMLVNNQSDMTNVSADFPNMPTSCMTQIGMVDGHQGKYGTLEPNNKMGLGRDFSLPSLESRRSIESDSVPIDVKSHNNHFNYGSFNNTDKIQGSKVEDLIGFGNHGQGEFFLENLMQDITSFPFLDF 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00201 310 FunFam Transcription factor MYB46 76 145 - -
Spst11g00201 310 CDD SANT 77 120 IPR001005 -
Spst11g00201 310 Gene3D - 19 75 - -
Spst11g00201 310 PANTHER MYB DOMAIN PROTEIN 55 16 233 - -
Spst11g00201 310 MobiDBLite consensus disorder prediction 123 143 - -
Spst11g00201 310 Pfam Myb-like DNA-binding domain 75 119 IPR001005 -
Spst11g00201 310 Pfam Myb-like DNA-binding domain 22 69 IPR001005 -
Spst11g00201 310 CDD SANT 25 69 IPR001005 -
Spst11g00201 310 ProSiteProfiles Myb-like domain profile. 17 69 IPR001005 -
Spst11g00201 310 SUPERFAMILY Homeodomain-like 20 116 IPR009057 -
Spst11g00201 310 SMART sant 74 122 IPR001005 -
Spst11g00201 310 SMART sant 21 71 IPR001005 -
Spst11g00201 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 124 IPR017930 -
Spst11g00201 310 FunFam MYB transcription factor 19 75 - -
Spst11g00201 310 Gene3D - 76 146 - -
Spst11g00201 310 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Spst11g00201 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 69 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00201 Spst-Chr11 7467965 7469631 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00201 1 310 MYB Transcription Factor Family AT3G08500 46.045 5.75e-77 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst11g00201 Myb_DNA-binding 1.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g00201 K09422 - gmx:100784755 558.525