Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00157 ATGCCCTTAGGCACGACCATACATAACATAGAAATCACACTTGGAAAGGGTGGACAATTAGCTAGAGCAGCTGGTGCTGTAGCGAAACTAATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAACTGCTCGGCAACAGTCGGACAAGTGGGAAATGTTGGGGTAAACCAGAAAAATTTAGGTAGAGCCGGATCTAAATGTTGGCTAGGTAAGCGTCCTATAGTAAGAGGAGTAGTTATGAACCCTGTAGACCATCCGCATGGGGGTGGTGAAGGGAGGGCCCCAATTGGTAGAAAAAAAACCTGCAACTCCTTGGGGTTTTCCTGCACTTGGAAGAAGAAGTAG 378 0.463 MPLGTTIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKNLGRAGSKCWLGKRPIVRGVVMNPVDHPHGGGEGRAPIGRKKTCNSLGFSCTWKKK 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00157 125 FunFam 50S ribosomal protein L2 62 125 - -
Spst11g00157 125 Gene3D - 1 62 IPR014722 -
Spst11g00157 125 PANTHER RIBOSOMAL PROTEIN L2 1 114 IPR002171 GO:0003735|GO:0005840|GO:0006412
Spst11g00157 125 SMART Ribosomal_L2_C_2 1 119 IPR022669 GO:0003735|GO:0005840|GO:0006412
Spst11g00157 125 FunFam 50S ribosomal protein L2 1 61 - -
Spst11g00157 125 Pfam Ribosomal Proteins L2, C-terminal domain 1 114 IPR022669 GO:0003735|GO:0005840|GO:0006412
Spst11g00157 125 SUPERFAMILY Translation proteins SH3-like domain 1 113 IPR008991 -
Spst11g00157 125 ProSitePatterns Ribosomal protein L2 signature. 84 95 IPR022671 GO:0003735|GO:0005840|GO:0006412
Spst11g00157 125 Gene3D Ribosomal protein L2, domain 3 63 125 IPR014726 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00157 Spst-Chr11 6350319 6350696 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00157 1 101 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 43.750 7.93e-21 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g00157 K02886 - qsa:O6P43_035413 238.424