Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00150 ATGTCCCTCCCCCCACCCGTAGCTCCTGCACCTATACCTTCTTCATCTGCAGGTGCAGAGAATATACATGCCCATACAAACAATATTGCACCTTCAGCCACTTCTGCCCCATCCCCAGTTGATGCACCCAACCCTAGTCCATCACCTGTCATTGCATCAACACCTTCCCCAGGAGCTACATTGCCTTCAGTATCATCAGTACCATCACCACTACCTTTGGTCTCACCTACATTACCCTCAAGTGGTGGTTGTAGCGGCGGCGTGGTCGACAGGCATGGTGGTGGATTTAAAATTGTCATCGATTTGGAGCCAGCGCGCAAGAGGACCCCGCGCTGTCCATCGCAGCTGCAGTCTCTCCCTGACGGTGATGTTAAGCTTCTCTGTGACACTGTTGTTGAGAGTGTTAGGGAATTGACAGGGTACGATAGGGTTATGGTTTATAAGTTTCATGAGGATGAGCATGGGGAGGTTGTTTCTGAGAGCAAGAGGCCTGATTTAAAGCCTTACATTGGTTTGCATTATCCCGCTACTGATATTCCTCAGGCTTCTAGGGTGGTGCAGGACGAGGCTCTTGTGCAGCCTCTCTGTTTGGTTGGGTCAACGCTCAGGGCCACCCATGGTTGTCATGCTCAGTACATGGCTAACATGGGGTCGATTGCATCTTTGGTCATGGCTGTTATTATTAATGGGAGTTCAAACTCAAGTTCTGAGGCCGATTCGGATTCTGAGTGTGTGGAATTGATAAATTCAGGTTCAAGATCAAAATTTGACTTCAATTCATTTTCTGGATTTTCCTCTTATGTTTGTGATGGGGATGCAACCCCTATGAGGCCAAGGCTTGGAGATTTACCCGAGAGCTGTGTGGCATTGTTGTTGATGTATTTGGACCCACCAGATATTTGCATGCTTGCACGATTGAGCAAGGCGTTTCGCGATGCTTCGTTAGCTTATTTCATTTGGGAATCAAAGTTGCCTTTGAATTATAAGTTCATCGTGGACAAAGCTTTGAAGGATGTTTCTGTACAAGACTCAGGGAAGAGGGATATTTATGCTAGACTCTGCAGGCCTAATTTGTTTGACAACGGGACCAAGGAAATTTGGCTGGATAAGAGGATGGGTGGGATGTGTATGGCGATTTCTTCCCAAGCGTTGAGGATTACAGGGATAGATGATACATAA 1179 0.4716 MSLPPPVAPAPIPSSSAGAENIHAHTNNIAPSATSAPSPVDAPNPSPSPVIASTPSPGATLPSVSSVPSPLPLVSPTLPSSGGCSGGVVDRHGGGFKIVIDLEPARKRTPRCPSQLQSLPDGDVKLLCDTVVESVRELTGYDRVMVYKFHEDEHGEVVSESKRPDLKPYIGLHYPATDIPQASRVVQDEALVQPLCLVGSTLRATHGCHAQYMANMGSIASLVMAVIINGSSNSSSEADSDSECVELINSGSRSKFDFNSFSGFSSYVCDGDATPMRPRLGDLPESCVALLLMYLDPPDICMLARLSKAFRDASLAYFIWESKLPLNYKFIVDKALKDVSVQDSGKRDIYARLCRPNLFDNGTKEIWLDKRMGGMCMAISSQALRITGIDDT 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00150 392 PANTHER F-BOX PROTEIN PP2-A15 271 392 - -
Spst11g00150 392 CDD F-box_AtSKIP3-like 280 325 - -
Spst11g00150 392 MobiDBLite consensus disorder prediction 38 52 - -
Spst11g00150 392 SUPERFAMILY GAF domain-like 122 230 - -
Spst11g00150 392 MobiDBLite consensus disorder prediction 53 68 - -
Spst11g00150 392 MobiDBLite consensus disorder prediction 1 68 - -
Spst11g00150 392 Gene3D - 107 233 IPR029016 -
Spst11g00150 392 SUPERFAMILY F-box domain 277 336 IPR036047 GO:0005515
Spst11g00150 392 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 123 231 IPR016132 -
Spst11g00150 392 ProSiteProfiles F-box domain profile. 277 323 IPR001810 GO:0005515
Spst11g00150 392 MobiDBLite consensus disorder prediction 19 37 - -
Spst11g00150 392 Pfam GAF domain 124 230 IPR003018 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00150 Spst-Chr11 5375737 5386298 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00150 98 247 Histidine Kinase Gene Family AT2G18790 62.162 1.41e-64 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g00150 K12121 - gmx:100789493 231.876