Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00134 ATGCCCTTAGACACAACCATACATAACATAGAAATCACAGTCGGAAAGAGTGGACAATTAGCTAGAGCAGCTGGTGCTATAGCGAAACTAATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTTTGGGGAGGTCCGTTTGATATCCAAAAACTACTCAACAACAATTAGACTAGTGGAAAATGTTGGGGTAAACCAGAAAAATTTAGGTAGAGCCGGATCTAAATGTTGGCTAGGTAAGTGTCCTATAGTAAGAGGAGTAGTTATGAACCCTATAGACCATCTGCATGGGGGTAGTGAAGGGAGGGCCCCAATTG 322 0.4224 MPLDTTIHNIEITVGKSGQLARAAGAIAKLIAKEGKSATLKLPFGEVRLISKNYSTTIRLVENVGVNQKNLGRAGSKCWLGKCPIVRGVVMNPIDHLHGGSEGRAPI 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00134 107 Pfam Ribosomal Proteins L2, C-terminal domain 1 106 IPR022669 GO:0003735|GO:0005840|GO:0006412
Spst11g00134 107 Gene3D - 1 61 IPR014722 -
Spst11g00134 107 ProSitePatterns Ribosomal protein L2 signature. 84 95 IPR022671 GO:0003735|GO:0005840|GO:0006412
Spst11g00134 107 SMART Ribosomal_L2_C_2 1 107 IPR022669 GO:0003735|GO:0005840|GO:0006412
Spst11g00134 107 SUPERFAMILY Translation proteins SH3-like domain 1 106 IPR008991 -
Spst11g00134 107 PANTHER RIBOSOMAL PROTEIN L2 1 104 IPR002171 GO:0003735|GO:0005840|GO:0006412
Spst11g00134 107 Gene3D Ribosomal protein L2, domain 3 62 107 IPR014726 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00134 Spst-Chr11 4493309 4493630 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00134 1 100 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 37.838 1.37e-13 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g00134 K02886 - gmx:3989337 175.252