Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00116 ATGGTGGTTGGGTACCATTTCATTGCTGCAACGCTGAATTTCCTGCTTCCTAATGCACTATGTTTCAAAGGAAGTTCCTCTTCCTTCTATAAAATGCTGAGTGGCACTGCAAAAGCAAACAAACTGTTTTTGATTTGGGCTAAGCCCAAGGTTATCAGAAACGCTTTCTCGGATCAAACCCAAGGGCAGCTAGTGATTGCTTTTGCTAGCATGACATCAAGTAATCTATTCTTTGATGATATACGGAGCAAAGTTGATGTTGATCCTCCTCAAAATGAAGAGTCAACAGATGTTGGTGAATTCATAAATGATCCTGCACTTAAACCTAATGGTACTGTTTCAAGCAGTGTTCGTGAGCTCTTAGAGTGCCCTGTATGCTTGAATGCAATGTACCCTCCAATCCATCAGTGTTCAAATGGTCACACAATATGCTCTGGTTGCAAACCCAGGGTCCATAACCGGTGCCCTACTTGTAGGCATGAGCTTGGCAATATCAGATGCCTGGCATTGGAGAAAGTGGCTGCATCTTTGGAACTTCCCTGTAAATATCAAGGTTTTGGGTGCATTGGTATATATCCATATTACAGCAAGCTAAAACATGAATCACAATGTGCATATAGACCTTACAACTGCCCATATGCTGGTTCAGAATGCTCTATTATGGGTGATATACCCTACCTGGTGGCTCATCTGAAAGACGACCACAAAGTGGACATGCACAATGGTAGCACTTTTAACCATCGCTATGTCAAATCAAATCCACAAGAAGTTGAAAATGCCACTTGGATGTTGACGGTCTTCAGCTGCTTTGGTCAGTATTTTTGTCTACATTTTGAAGCTTTTCAGCTAGGAATGGCTCCTGTCTACATAGCCTTTTTGCGGTTTATGGGTGATGATAATGAGGCAAAGAATTATAGCTACAGTTTAGAGGTAGGTGGAAATGGGAGGAAGATGATTTGGCAGGGGGTGCCTAGGAGCATCAGGGACAGCCACCGCAAGGTTCGGGACAGTTTTGATGGTCTCATCATTCAGAGGAATATGGCCCTCTTTTTTTCCGGCGGTGACCGAAAGGAATTGAAGCTGAGGGTTACTGGTAGGATTTGGAAAGAACAATGA 1116 0.4319 MVVGYHFIAATLNFLLPNALCFKGSSSSFYKMLSGTAKANKLFLIWAKPKVIRNAFSDQTQGQLVIAFASMTSSNLFFDDIRSKVDVDPPQNEESTDVGEFINDPALKPNGTVSSSVRELLECPVCLNAMYPPIHQCSNGHTICSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQGFGCIGIYPYYSKLKHESQCAYRPYNCPYAGSECSIMGDIPYLVAHLKDDHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYSYSLEVGGNGRKMIWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00116 371 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 89 174 IPR013083 -
Spst11g00116 371 CDD RING-HC_SIAHs 121 159 - -
Spst11g00116 371 SUPERFAMILY RING/U-box 115 163 - -
Spst11g00116 371 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 232 364 IPR008974 GO:0005515
Spst11g00116 371 FunFam E3 ubiquitin-protein ligase SINAT5-like 84 174 - -
Spst11g00116 371 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 175 231 IPR013083 -
Spst11g00116 371 SUPERFAMILY TRAF domain-like 176 368 - -
Spst11g00116 371 FunFam E3 ubiquitin-protein ligase SINAT3 175 231 - -
Spst11g00116 371 ProSiteProfiles Zinc finger RING-type profile. 123 159 IPR001841 -
Spst11g00116 371 ProSiteProfiles Zinc finger SIAH-type profile. 176 236 IPR013010 GO:0008270
Spst11g00116 371 CDD Sina 237 365 - -
Spst11g00116 371 FunFam E3 ubiquitin-protein ligase SINAT5-like 232 364 - -
Spst11g00116 371 Pfam Seven in absentia protein family 165 364 IPR018121 GO:0005737|GO:0006511|GO:0007275
Spst11g00116 371 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 104 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00116 Spst-Chr11 2484610 2488435 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00116 73 371 C3H Transcription Factor Family AT2G41980 70.333 2.46e-160 450
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g00116 K04506 - gmx:100793457 629.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst11g00116 11 2484610 2488435 Spst11g00116 11 2484610 2488435 ECH
Spst5g02127 5 56647003 56650410 Spst11g00116 11 2484610 2488435 PCT