Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00099 ATGAACATGTTAGGCCTGAGGGACCTAGTTCTCATAGCTCCAACCGCTTCTCAACTTCACCACCACCAACACCAACACCACCCTATTTCAGCAGAACACCATCCTAATCTTCCCTTGCCTTCTCCGGCCTCTCTCAGCGTTGGCCTCGGCATTTTCCCACTCCTAACAGTTCCACATACCAATGATGTTCAGGTTCAGGTTCAAGACTGTGCCAACAACACCACCAACAACACCACCACCAACACCAACTATTGGAACCTCAAGATGTGTGGTGTCTCAGAAGTGAATTCCACAAGAAAAGGTGTCATGAACATAGAAGATGAGGGGGGCAACAGGCATGTGATGGAGAGTGAGGAAAGTGGTGGTGAGTTTAGGGTGTGCCAGGATTGTGGCAATAGGGCCAAGAGGGATTGCAGCTACAGAAGGTGCAGGACTTGTTGCAAAGGACGTGGCTTTGATTGCAGCACTCACGTGAAGAGCACGTGGGTCCCCGCGTCTCTGAGACGCAGTGCTGGTAATAGTGGTAGTGATGGTAACGGTGACGGAGATGGTGATGGTGGTGCTTCTAAGAGGCTAAGAACAATAGGCTCATCAAAGAATGTTGCTGCTACTTCTCATAGTTCCACTTCCAATGCTACCCAAACAAAGAGCTTTAGCTTAGACACTAGCTCTTGTCAACAAGATGCTAGTTTCAAGCAATCTTTGCCACGGCATGTGCGTGCACCTGCTGTGTTTAGATGCCATAGAGTGTCTGCTATTGGGAGTGGTGAAGATGAGGTTGCATACTTGGCCACAGTGCATATCAGTGGCCATGTGTTCAAGGGCTTTCTTTATGATCATGGTGCTGATGCCAGAAATGATGTGCCTAGTGTCTCTGAACTGCAACTGGGAAACAATGGAAGTGGAAAGAGTAATAACAGGGAATGTTCTTCTGCAATTGGGGTTCCAACCAGTGCTTACCCTGCTTCTGTTTGCTGA 978 0.4847 MNMLGLRDLVLIAPTASQLHHHQHQHHPISAEHHPNLPLPSPASLSVGLGIFPLLTVPHTNDVQVQVQDCANNTTNNTTTNTNYWNLKMCGVSEVNSTRKGVMNIEDEGGNRHVMESEESGGEFRVCQDCGNRAKRDCSYRRCRTCCKGRGFDCSTHVKSTWVPASLRRSAGNSGSDGNGDGDGDGGASKRLRTIGSSKNVAATSHSSTSNATQTKSFSLDTSSCQQDASFKQSLPRHVRAPAVFRCHRVSAIGSGEDEVAYLATVHISGHVFKGFLYDHGADARNDVPSVSELQLGNNGSGKSNNRECSSAIGVPTSAYPASVC 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00099 325 NCBIfam putative zinc finger domain, LRP1 type 126 167 IPR006510 -
Spst11g00099 325 MobiDBLite consensus disorder prediction 165 192 - -
Spst11g00099 325 MobiDBLite consensus disorder prediction 18 37 - -
Spst11g00099 325 NCBIfam LRP1 C-terminal domain 235 281 IPR006511 -
Spst11g00099 325 Pfam Domain of unknown function (DUF702) 126 283 - -
Spst11g00099 325 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 44 311 IPR007818 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00099 Spst-Chr11 2147869 2149391 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00099 1 312 C2H2 Transcription Factor Family AT5G12330 40.881 5.51e-53 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Spst11g00099 DUF702 3.7e-52 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g00099 - - gmx:100777812 521.931