Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00090 ATGGGAGTGGAACAAGAGATGGAGGAGGAGAAAGAAGAAACATCCAACCGAATCCAAAAGCAAAAGCAAAAGCAAAAGCTAGACCAAAACAACCACCCTTCAAATTCTCTCCTCCTCCCAATCAAGGAAGAGAGTGGAGGAGTGAGATCAAAGGGGTTTGGAGGGGGAGACAGAGTGAAGAGAGATGAGTGGAGTGAAGGGGCAGTGTCAACCCTTCTAGAGGCCTACGAGGCCAAATGGGTGCTCAGAAACAGAGCCAAACTCAAGGGCCATGACTGGGATGACGTCGCGCGGCACGTGTCCGCACGTGCCAACTGCACCAAGTTACCCAAAACCTCCACGCAGTGCAAGAACAAGGTCGAGTCCATGAAGAAGAGGTACCGATCAGAATCTGCAACCTCAGATCATGCCTCCTCATGGCCTCTCTATTCGCGCCTCGATCTTCTTCTCAGGGGAACAGGCCCGCTTCTCTCCTCCCCGCCCCTCCCGGCGGTGCTCACGGCGGAGCCCTCGCAGATGGAACCGCCCCTACAGTCGCCTCCTCCGGCGCCACCGTCGTCAGGGCCACTTGCAATTGCGCAGAACTCGCATGGATCGAATGGGGTTGATGACATTGACAAGCTCGTTAAGGAAGATGGGTTAGGAAGAAAGTCATATGAGAATGTATCAAGCAAGAATCCCGTGGACACAGATAGCAGCACCCCTGCACTTTACTGCAAGGAGGAGTTGAGAAGTAAGAAGAGGAAGAAGAACATAAATGACAGCACAGGGAGAAGGAGGAAAGAGTATATGGAGATAGCAGAAAGCTTGAGATGGCTTGCAGAAGCCATGATTAGGTCAGAGGAAGCAAGAATGGAGGCAGTGAAGGAGATTGAGAGGATGAGAGTTGAAGCTGAGGCCAAGAGAGGGGAGATGGAGCTGAAGAGAACTGAAATAATTGCCAACACACAGTTAGAGATTGCTAGGATCTTTGCTTCTGTCAACAAAGGTGCTGTTGATTCATCTCTAAGAATTGGAAGAAGCTAA 1026 0.5097 MGVEQEMEEEKEETSNRIQKQKQKQKLDQNNHPSNSLLLPIKEESGGVRSKGFGGGDRVKRDEWSEGAVSTLLEAYEAKWVLRNRAKLKGHDWDDVARHVSARANCTKLPKTSTQCKNKVESMKKRYRSESATSDHASSWPLYSRLDLLLRGTGPLLSSPPLPAVLTAEPSQMEPPLQSPPPAPPSSGPLAIAQNSHGSNGVDDIDKLVKEDGLGRKSYENVSSKNPVDTDSSTPALYCKEELRSKKRKKNINDSTGRRRKEYMEIAESLRWLAEAMIRSEEARMEAVKEIERMRVEAEAKRGEMELKRTEIIANTQLEIARIFASVNKGAVDSSLRIGRS 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00090 341 MobiDBLite consensus disorder prediction 161 242 - -
Spst11g00090 341 Coils Coil 288 308 - -
Spst11g00090 341 MobiDBLite consensus disorder prediction 10 27 - -
Spst11g00090 341 Pfam Myb/SANT-like DNA-binding domain 61 148 IPR044822 -
Spst11g00090 341 Gene3D - 64 129 - -
Spst11g00090 341 MobiDBLite consensus disorder prediction 174 188 - -
Spst11g00090 341 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 32 327 IPR044823 -
Spst11g00090 341 MobiDBLite consensus disorder prediction 1 60 - -
Spst11g00090 341 Coils Coil 4 24 - -
Spst11g00090 341 MobiDBLite consensus disorder prediction 219 233 - -
Spst11g00090 341 MobiDBLite consensus disorder prediction 203 218 - -
Spst11g00090 341 FunFam Trihelix transcription factor ASIL2 64 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00090 Spst-Chr11 1889716 1891962 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00090 38 153 Trihelix Transcription Factor Family AT3G14180 38.843 5.03e-19 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Spst11g00090 Myb_DNA-bind_4 1.6e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g00090 - - gmx:100784245 416.001
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst11g00090 11 1889716 1891962 Spst11g00090 11 1889716 1891962 ECH