Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00073 ATGAGTCCTCCAGCTGAATCCAACAACATGGAAGATTGCAAGTCCGAAAATGGCACCGACCAAGTCGTGTCTCGCTTCGTTGAGTTCTGCAAGTCCATAAAATCTAATAAGCGCCCCTGCAGTGATGTGGTGGAGTATTGCAGCAAGCTGGCCTTTCCATTAGGGTATCACCTTTCACATATTTCTGTGCCTCCATTTTTCTGGGCATATCCTGGTGGACTATATAGTCTGGCTGAAGCTGGATCTGGAGCTAACTACATTTTGCCTAATCACCTCCCTAATTCTGTCATTTTTTTTATCCTGGACAACCTCTTTGCAGACCAAAATGGGTTAGCATTGGAAGAGAAAAGTTGTAAAGAAGCAATCAATCTGTTAAGAGAAACCAAACATATTCTTCTGACCAATTTTTCATCAATGGGGAATGGAACGTCTGAAGAAGCCGAGCGGTATTGGTTTGCTTTTATTTCATACTCTGTCAAGAAATTGATCCAGAAAAATGAGGAGGTTGCAAAGGAAGATACTGTGCACACTGGGCTTAGCTTGTGTCGCATATTGAGAGCAGCCAAGCTCAACATTGCAGATTTTTTCAAAGAACTTCCACAGTTTGTTGTTAAGGCTGGTCCAACTTTAAGTTATCTATATGGAACAGATTGGGAAAACAGGCTAGAGGCTAAGGAGATGCATGCCAATGCTATTCACTTAAAGATTCTTAGCAAGTACTATAAACGAGTATTTGGAGAGTTCTTTGTGACAACTGACTCAAATGCTGAAAAGAACTCATCTGTTACTGTTCATGCATCTGAATACCATCGATTTGGATGGTTGCTCTTCTTGGCTCTTCGTGTCCATGCTTTCAGCCGCTTCAAAGACTTAGTGACATGCACCAATGGTTTAATATCAATCTTGGCCATCTTAATTATTCATGTTCCTACTCGGTTTCGGAATTTCAACATTCATGACTCCTCACGCTTTGTTAAGAAAAATAACAAAGGTGTGGACCTCCTTGCTTCACTTTGCAACATATACAACACTACTGAAGATGAGTTGAGGAAAACAATGGAGAAAGCCAATAATATAATAGCAGATATATTGAAGAAGAAGCCCTGCTTGGCATCTGAATGCGAAACCGAAAACCTAGAGAATATCGATAAAGATGGTTTGACCTATTTTAAAGACCTGATGGAAGAATCGTCTTTACCTTCTAGTTTAAATTTATTAGAAAAAGATTATGATTACATGATTTGCAATAAGAGTGAACTGGACGAGAGGTTATTCATTAATGAGGATGATAGCCTATTAGCTTCGGGAAGCTTGTCTGGAGGTTCTGTTTCAGCAGGTGGTGTAAAGAGGAAATTTGACTCACTGGCATCACCTGCTAAGACGATTACAAGTCCACTCTCACCTCACCGCTCTCCCTCGTCACATGCAAATGGCATCCCGGGTAGCGCAAACTCAAAGATGGCAGCTACGCCTGTAAGCACAGCAATGACTACAGCAAAGTGGCTTCGAACTGTCATTTCTCCACTTGCACCAAAACCCTCACCAGAGCTGGAACGGTTTTTGACATCATGTGATAGGGATGTTACAAGTGATGTAGTGCGCAGAGCACAGATTATATTGCAGGCTACATTTCCTAGTAGTCCACTTGGAGAACTATGTGTAACTGGAAGCCTGCAAAGTGCAAATCTCATGGACAATATCTGGGCAGAACAACGAAGATTGGAAGCACTGAAGTTATACTACAGGGTATTGGAATCCATGTGCAGAGCTGAAGCTCAAGTTTTTCATGCAACTAATTTGACCTCTCTTCTTACCAACGAGAGGTTTCATCGGTGTATGCTTGCATGTTCTGCAGAATTAGTCTTGGCAACACATAAGACTGTAACAATGTTATTCCCTGCAGTACTTGAGAGGACTGGAATTACAGCCTTCGATCTTAGCAAGGTGATTGAAAGTTTCATTAGACACGAAGAATCTCTGCCTAGAGAATTGAGGCGACATCTGAATTCATTGGAAGAACGACTTTTGGAGAGTATGGTATGGGAAAAGGGTTCTTCAATGTATAATTCTTTGGCAGTGGCCAGACCTGCCCTTTCTGCAGAGATAAATCGCCTAGGATTGTTAGCTGAACCAATGCCATCATTAGATGAAATTGCAATGCATATTAACTTCTCTTGTGGTGGGCTGCCACCAGTGCCCACCTTGCCTAAGCTTGAAAGTTCACCAAATCAGAATGGGGATATCAGATCACCAAAGCGAAATGTGTTGATGGAAAGAAATTCTTTCACTTCACCAGTGAAAGACCGGCTTCTCCCCTTCAGCAACCTTAAATCAAAACTACCCCCACCTCCTTTGCAGTCAGCATTTTCCAGCCCAACAAAGCCAAATCCAGGAGGTGGAGGGGAAACATGTGCAGAAACTGGGATTAACATCTTTTTCGGCAAGATCATTAAGTTGGGTGCAGTCAGAATTAGTGGCATGGTTGAAAGACTACAACTATCTCAGCAGATAAGGGAGAATGTATACTGTCTTTTCCAGCGGATTCTAAATCAACGGACATCTCTCTTTTTCAACCGTCATATTGACCAAATCATCTTGTGTTGTTTTTATGGAGTTGCAAAGATTTCACAACTGAACCTAACTTTTAGGGAAATTGTATACAACTACAGAAAGCAACCTCATTGCAAACCACAAGTTTTTCGCAGTGTATTTGTTGATTGGTCATTGGCACGCCGAAATGGGAGAACAGGACAGGAGCATGTTGACATCATTACCTTTTACAATGAAATATTTATTCCCTCTGTAAAGCCACTGCTGGTTGAACTTGACCCTTCTGGAGCAACTACAAAGAGTGACCGAATACCTGAAGTCAATAATAAAAATGATGGCCATTTAGCTCAATGTCCAGGATCTCCTAAAATATCATCTTTCCCTAGCCTTCCCGATATGTCTCCAAAAAAAGTGTCTGCCACACACAATGTATATGTTTCTCCATTACGATCGTCCAAGATGGATGCTCTCATATCGCACAGCTCAAAAAGCTATTATGCATGTGTTGGGGAGAGCACTCATGCTTATCAGAGCCCTTCAAAAGACCTGACTGCCATCAATAACCGTTTGAACGGCAACAGGAAGGTGAGAGGAACTCTGAATTTTGATGACGTTGATGTGGGCTTGGTTAGTGATTCCATGGTTGCAAACAGCCTCTATCTGCAGAATGGAAGTTGTGCATCATCATCAGGTGCACCAGTGAAATCAGAGCAACCTGACTCTTAA 3276 0.4191 MSPPAESNNMEDCKSENGTDQVVSRFVEFCKSIKSNKRPCSDVVEYCSKLAFPLGYHLSHISVPPFFWAYPGGLYSLAEAGSGANYILPNHLPNSVIFFILDNLFADQNGLALEEKSCKEAINLLRETKHILLTNFSSMGNGTSEEAERYWFAFISYSVKKLIQKNEEVAKEDTVHTGLSLCRILRAAKLNIADFFKELPQFVVKAGPTLSYLYGTDWENRLEAKEMHANAIHLKILSKYYKRVFGEFFVTTDSNAEKNSSVTVHASEYHRFGWLLFLALRVHAFSRFKDLVTCTNGLISILAILIIHVPTRFRNFNIHDSSRFVKKNNKGVDLLASLCNIYNTTEDELRKTMEKANNIIADILKKKPCLASECETENLENIDKDGLTYFKDLMEESSLPSSLNLLEKDYDYMICNKSELDERLFINEDDSLLASGSLSGGSVSAGGVKRKFDSLASPAKTITSPLSPHRSPSSHANGIPGSANSKMAATPVSTAMTTAKWLRTVISPLAPKPSPELERFLTSCDRDVTSDVVRRAQIILQATFPSSPLGELCVTGSLQSANLMDNIWAEQRRLEALKLYYRVLESMCRAEAQVFHATNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLAVARPALSAEINRLGLLAEPMPSLDEIAMHINFSCGGLPPVPTLPKLESSPNQNGDIRSPKRNVLMERNSFTSPVKDRLLPFSNLKSKLPPPPLQSAFSSPTKPNPGGGGETCAETGINIFFGKIIKLGAVRISGMVERLQLSQQIRENVYCLFQRILNQRTSLFFNRHIDQIILCCFYGVAKISQLNLTFREIVYNYRKQPHCKPQVFRSVFVDWSLARRNGRTGQEHVDIITFYNEIFIPSVKPLLVELDPSGATTKSDRIPEVNNKNDGHLAQCPGSPKISSFPSLPDMSPKKVSATHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAYQSPSKDLTAINNRLNGNRKVRGTLNFDDVDVGLVSDSMVANSLYLQNGSCASSSGAPVKSEQPDS 1091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00073 1091 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 109 1089 IPR028309 GO:0006357|GO:0051726
Spst11g00073 1091 Coils Coil 346 366 - -
Spst11g00073 1091 MobiDBLite consensus disorder prediction 735 759 - -
Spst11g00073 1091 MobiDBLite consensus disorder prediction 738 759 - -
Spst11g00073 1091 MobiDBLite consensus disorder prediction 462 486 - -
Spst11g00073 1091 MobiDBLite consensus disorder prediction 778 801 - -
Spst11g00073 1091 CDD CYCLIN_AtRBR_like 809 940 - -
Spst11g00073 1091 Pfam Domain of unknown function (DUF3452) 177 308 IPR024599 -
Spst11g00073 1091 FunFam Retinoblastoma-related protein 1 493 681 - -
Spst11g00073 1091 Pfam Retinoblastoma-associated protein B domain 809 936 IPR002719 GO:0005634|GO:0051726
Spst11g00073 1091 Gene3D - 269 427 - -
Spst11g00073 1091 SUPERFAMILY Cyclin-like 807 946 IPR036915 -
Spst11g00073 1091 FunFam Retinoblastoma-related protein 1 269 427 - -
Spst11g00073 1091 Pfam Retinoblastoma-associated protein A domain 490 691 IPR002720 GO:0005634|GO:0051726
Spst11g00073 1091 SMART RB_A_2 490 691 IPR002720 GO:0005634|GO:0051726
Spst11g00073 1091 Gene3D - 770 959 - -
Spst11g00073 1091 SMART DUF3452_2 162 308 IPR024599 -
Spst11g00073 1091 FunFam Retinoblastoma-related protein 1 759 972 - -
Spst11g00073 1091 SUPERFAMILY Cyclin-like 498 693 IPR036915 -
Spst11g00073 1091 Gene3D - 493 681 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00073 111 1091 Core Cell Cycle Gene Families AT3G12280 71.285 0.0 1404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR RB Spst11g00073 RB_A 9.5e-65 CL0065
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g00073 K04681 - gmx:100779266 1816.2