Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00067 ATGCATCTTCTCTCTGTTGTTCTGCTGATTCTGATATCAGCACCAATCGTTATTGTAGGTGCAGTTTTTTCTATTGATAATATTAGGGGTACATCCCTGAACAGGAGCAGTTTTCCAGAAGGTTTTATATTTGGGACAGCATCCTCTGCTTATCAGTGTGAAGGTGCAGCAAATGTTGGTGGCAGAGGACCAAGTATATGGGATACATACACTCATAATTACCCAGATAAAATTGTGGACAGAAGTAATGGAGATGTTACCATTGATCAATACCATCGTTATAAGGAAGATGTTGAAATCATTAAGGAAATGAACATGGATGCTTACAGATTCTCAATCTCTTGGTCCAGAATACTTCCAAAAAGAAAGGTTAGCAGAGGTGTGAACAAGGAAGGAATCAACTATTACAACAACCTCATCAATGAACTGTTAGCTAAAGGTCTTAAACCCTTTGTGACCATTTTCCATTGGGACCTTCCTCAAGCCTTAGAAGACGAATATGGTGGTTTTCTAAGTCCTAATATAGTGAATGATTTTCAAGATTATGCAGAACTTTGTTTTAGAGAATTTGGAGACAGGGTGAAACATTGGATTACATTAAATGAACCATGGACCTTTAGCAAATATGGGTATGCTGATGGCATTTCACCACCTGGAAGATGTTCCAGTTGGCAAAACTTAGATTGTAATGATGGTGATTCAGCCATTGAACCCTATATAGTGACTCACAATCAATTACTTGCTCATGCAGCTGCAGTCAATGTTTATAAGACAAAGTATCAGGCATCTCAAAAGGGTATGATAGGGATATCACTAGCATGTCATTGGATGGTACCACTCTATGTTACAGAGTTGGATCGCCATGCTGCACAAAGAGCCCTTGATTTTATGTTTGGATGGTTTATGGAGCCATTGACAATTGGAGAATACCCTTATTCTATGCAATCTTTGGTAGGGAGTCGCTTACCAAATTTCTCTGCTATTGAGATCAAACTTGTAAGAGGGTCCTTTGATTTTATTGGATTGAACTACTACACTTCTTATTATGCTACTGATGCACCAGAATTAAGTGAAGCCAGGCCTAGCTACCTCACAGATTCTCTTGTTATTCTTACAAGTATAGATGAATTCAATGATCCTACTCTATCACTTGAAAAAGCCCTTGCCGATACTTCAAGAATTGATTACTTTTATGATCATCTCTATTATCTTCGAAGTGCAATCAAGCTACATTTCAAGGATCTCTACGTACAGTGGCATGATCCCAGGGATCTACTGTTCTGTTTTGCTAGTTCTGATATTTTGTGTTTGCACTCCTCATTCATTTTGATTCTGCAATGGTCTTGGGTAGAATGCAAACCAATTTCAAGGCAGAAATACAAACCCACCTCAGCATCTCTTGCCCATGCAATGGATGTACCATTCATTGCAAAATTTTGGAAATAA 1446 0.3838 MHLLSVVLLILISAPIVIVGAVFSIDNIRGTSLNRSSFPEGFIFGTASSAYQCEGAANVGGRGPSIWDTYTHNYPDKIVDRSNGDVTIDQYHRYKEDVEIIKEMNMDAYRFSISWSRILPKRKVSRGVNKEGINYYNNLINELLAKGLKPFVTIFHWDLPQALEDEYGGFLSPNIVNDFQDYAELCFREFGDRVKHWITLNEPWTFSKYGYADGISPPGRCSSWQNLDCNDGDSAIEPYIVTHNQLLAHAAAVNVYKTKYQASQKGMIGISLACHWMVPLYVTELDRHAAQRALDFMFGWFMEPLTIGEYPYSMQSLVGSRLPNFSAIEIKLVRGSFDFIGLNYYTSYYATDAPELSEARPSYLTDSLVILTSIDEFNDPTLSLEKALADTSRIDYFYDHLYYLRSAIKLHFKDLYVQWHDPRDLLFCFASSDILCLHSSFILILQWSWVECKPISRQKYKPTSASLAHAMDVPFIAKFWK 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00067 481 Pfam Glycosyl hydrolase family 1 36 355 IPR001360 GO:0004553|GO:0005975
Spst11g00067 481 PANTHER GLYCOSYL HYDROLASE 37 419 IPR001360 GO:0004553|GO:0005975
Spst11g00067 481 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 42 56 IPR033132 -
Spst11g00067 481 PRINTS Glycosyl hydrolase family 1 signature 336 350 IPR001360 GO:0004553|GO:0005975
Spst11g00067 481 PRINTS Glycosyl hydrolase family 1 signature 390 401 IPR001360 GO:0004553|GO:0005975
Spst11g00067 481 FunFam Beta-glucosidase 12 24 375 - -
Spst11g00067 481 SUPERFAMILY (Trans)glycosidases 33 409 IPR017853 -
Spst11g00067 481 Gene3D Glycosidases 22 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00067 Spst-Chr11 1256390 1267548 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00067 3 410 Glycoside Hydrolase AT5G42260 48.330 5.01e-148 431
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g00067 K01188 - qsa:O6P43_000091 563.148