Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00039 ATGGGGTATGAAACCAGAATACTCTCAGAGGAGTATGAAGTCTCAGAAGTCCTTGGGAGAGGTGGATTTTCTGTTGTCAGAAAAGGCATAAGAAAATCAAGCAGTGACACCAATAACCAAGTAGCCATCAAAACCCTGAGAAGGTTAGGCACTGCCTCAAACTCCACCAATCCTTCTGGGTTTCCAAAACCAAAGGGTGAAGAGAAGAGCGCAGCAGCTATGATGGGGTTCCCCACATGGAGACAAGTCTCAGTCTCAGATGCCTTGCTCACCAATGAGATTCTTGTGATGAGGAGAATAGTGGAAAACGTTTCACCACACCCCAATGTTATTGACCTCTATGATGTGTATGAGGACTCAAATGGAGTGCACCTTGTGTTGGAGCTGTGTTCTGGTGGGGAATTGTTTGATAGGATTGTGGCACAAGATAGGTACTCAGAGACTGAAGCTGCAGGTGTGATTCGGCAGATAGCTTCAGGATTAGAGGCTCTTCATAGAGTTAACATTGTACACAGGGACTTGAAGCCTGAGAATTGTCTTTTCTTGGATGAGAGGAGGGACTCTCCTCTTAAGATAATGGACTTTGGGTTGAGTTCTGTTGAAGAATTCACTGACCCAGTTGTTGGTTTGTTTGGATCCATTGATTATGTTTCACCAGAGGCTCTTTCTCAAGGGAAGATAACTACCAAGAGTGACATGTGGTCTCTGGGGGTGATTCTATATATCTTACTCTCTGGGTATCCACCTTTCATAGCTCAGTCCAATCGCCAGAAACAACAAATGATAATGAATGGGAATTTCAGTTTCTATGAGAAGACATGGAAGGGCATTACTCAATCAGCAAAGCAACTGATTTCAGATCTTCTGACTGTAGATCCTAGCAGGAGACCTAATGCTCAAGATCTTCTGAATCATCCATGGGTGGTAGGTGACAAAGCCAAGGATGATGCAATGGACCCTGAGATTGTCTCTAGATTGCAGAGTTTCAACGCAAGACGCAAACTGCGTGCAGCTGCAATTGCTAGTGTTTGGAGCTCCACAATCTTCCTCAGAACCAAAAAGCTGAAATCCTTGGTGGGAACTCATGATCTCACAGAAGAGGAAATTGAAAAGCTCAGGATAAATTTCAAGAAAATATGTGTGAGTGGAGACAATGCCACTCTATCTGAGTTTGAGGAGGTGCTGAAAGCAATGAATATGGCATCACTGATCCCTCTAGCACCACGAATATTTGACTTGTTTGACAACAACCGTGATGGAACAGTTGACATGAGAGAGATACTATGTGGGTTTTCCAGCTTCAGAAACTCCAAAGGAGATGATGCTCTCCGTTTGTGCTTCCAGATGTATGACACAGATCGATCAGGGTGCATCACCAAGGAAGAAGTAGCATCCATGTTCAGAGCTTTACCAGAAAAGTGTCTGCCAGCTGATATCACTGAACCTGGGAAACTGGATGAGATATTTGACAGAATGGATGCCAACAGTGATGGAAAAGTCACCTTCGATGAATTCAAAGCTGCCATGCAGATAGATAGCTCTCTCCAAGACCTTCTTCTCTCTTCTCTTCGCCCACCACAATCCTAG 1587 0.4423 MGYETRILSEEYEVSEVLGRGGFSVVRKGIRKSSSDTNNQVAIKTLRRLGTASNSTNPSGFPKPKGEEKSAAAMMGFPTWRQVSVSDALLTNEILVMRRIVENVSPHPNVIDLYDVYEDSNGVHLVLELCSGGELFDRIVAQDRYSETEAAGVIRQIASGLEALHRVNIVHRDLKPENCLFLDERRDSPLKIMDFGLSSVEEFTDPVVGLFGSIDYVSPEALSQGKITTKSDMWSLGVILYILLSGYPPFIAQSNRQKQQMIMNGNFSFYEKTWKGITQSAKQLISDLLTVDPSRRPNAQDLLNHPWVVGDKAKDDAMDPEIVSRLQSFNARRKLRAAAIASVWSSTIFLRTKKLKSLVGTHDLTEEEIEKLRINFKKICVSGDNATLSEFEEVLKAMNMASLIPLAPRIFDLFDNNRDGTVDMREILCGFSSFRNSKGDDALRLCFQMYDTDRSGCITKEEVASMFRALPEKCLPADITEPGKLDEIFDRMDANSDGKVTFDEFKAAMQIDSSLQDLLLSSLRPPQS 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00039 528 ProSiteProfiles EF-hand calcium-binding domain profile. 480 515 IPR002048 GO:0005509
Spst11g00039 528 Gene3D Phosphorylase Kinase; domain 1 66 135 - -
Spst11g00039 528 FunFam Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase 135 325 - -
Spst11g00039 528 Gene3D Phosphorylase Kinase; domain 1 8 54 - -
Spst11g00039 528 CDD STKc_CAMK 12 307 - -
Spst11g00039 528 Pfam EF hand 411 426 IPR002048 GO:0005509
Spst11g00039 528 SUPERFAMILY Protein kinase-like (PK-like) 4 325 IPR011009 -
Spst11g00039 528 ProSitePatterns EF-hand calcium-binding domain. 493 505 IPR018247 -
Spst11g00039 528 Pfam Protein kinase domain 90 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst11g00039 528 ProSitePatterns Protein kinases ATP-binding region signature. 18 44 IPR017441 GO:0005524
Spst11g00039 528 Gene3D Transferase(Phosphotransferase) domain 1 136 351 - -
Spst11g00039 528 CDD EFh 409 468 IPR002048 GO:0005509
Spst11g00039 528 FunFam Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase 76 134 - -
Spst11g00039 528 ProSiteProfiles Protein kinase domain profile. 12 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst11g00039 528 PRINTS Recoverin family signature 364 383 - -
Spst11g00039 528 PRINTS Recoverin family signature 434 453 - -
Spst11g00039 528 PRINTS Recoverin family signature 410 431 - -
Spst11g00039 528 PRINTS Recoverin family signature 500 520 - -
Spst11g00039 528 PANTHER SERINE/THREONINE-PROTEIN KINASE 7 489 - -
Spst11g00039 528 ProSitePatterns EF-hand calcium-binding domain. 415 427 IPR018247 -
Spst11g00039 528 ProSiteProfiles EF-hand calcium-binding domain profile. 402 437 IPR002048 GO:0005509
Spst11g00039 528 FunFam calcium and calcium/calmodulin-dependent serine/threonine-protein kinase DMI-3 351 520 - -
Spst11g00039 528 CDD EFh 443 510 IPR002048 GO:0005509
Spst11g00039 528 Pfam EF-hand domain pair 441 510 IPR002048 GO:0005509
Spst11g00039 528 ProSitePatterns EF-hand calcium-binding domain. 451 463 IPR018247 -
Spst11g00039 528 SMART efh_1 406 434 IPR002048 GO:0005509
Spst11g00039 528 SMART efh_1 442 470 IPR002048 GO:0005509
Spst11g00039 528 SMART efh_1 484 512 IPR002048 GO:0005509
Spst11g00039 528 Gene3D - 352 520 - -
Spst11g00039 528 SMART serkin_6 12 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst11g00039 528 FunFam Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase DMI-3 isoform A 3 57 - -
Spst11g00039 528 ProSiteProfiles EF-hand calcium-binding domain profile. 438 473 IPR002048 GO:0005509
Spst11g00039 528 SUPERFAMILY EF-hand 353 517 IPR011992 -
Spst11g00039 528 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00039 Spst-Chr11 724091 727823 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00039 89 510 EF-hand Containing Proteins AT3G10660 37.558 9.81e-79 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMK1-DCAMKL Spst11g00039 Pkinase 1.1e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g00039 K13412 - gmx:732616 945.266