Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00017 ATGAGACGAGTGAGTGGCAATGAAATTGAAGATGAGGTGCTTCCCAATGATCTGAGTGCGGCACAGTTGACTGATGAGAGTTATGAAGGAAGTGCCGGCGTTGTTCTGAAGAAAGGGCCGTGGACATCAACTGAAGATGATATTTTGGTGGATTATGTCAACAAGCATGGGGAGGGGAACTGGAATGCTGTTCAGAAGCACACAGGGCTATTACGTTGCGGAAAAAGTTGTCGGCTGCGATGGGCTAATCACCTAAGGCCGAATTTAAAGAAAGGGGCGTTTACTGCAGAAGAGGAGCGGTTCATTGCTGAACTTCATGCCAAAATGGGAAACAAATGGGCACGCATGGCAGCACATTTGCCTGGTCGTACCGATAATGAGATAAAGAATTACTGGAACACCCGGATCAAGAGGCGTCAAAGGGCTGGGTTGCCACTTTATCCCCCAGAAGTGTGTTTGCAAGGTTTTCAAGAGAGTCAGCGTAGCCAAAACAATGGTGGACTTAATGGTGGCAATAAAATGCATCCTGATTTATTGCAGAAAAATAGTTATGAGACACGTGTTGCTATATTTGACAGCCTGAAGGATAATCAGGGAATATTACCTTATGTGCCCGAGTTTTCTGACGTTTCTGTTTATGACAATATGCTAAAAGGTCTTGATTCTTCTCAATATTGTAGTTTTAGGCCACCAACATCACCTAAGCATAAGCGTCTTAGAGAGTCAACAATACCATTTATTGATTCCAGTGATACGAAAAAAACTGGTTTATATCCATTTGGTCAATTTCGGGACAATAATTCTGATAAGATTGCACAATCATTTGCAATGCAAGCACCCCTTGATCCTGCTCCCTCATCACACAGCTCAATGTGTTACAGCCATTCACTGTCAAATGGCAATTCCTCTACTTCTAAGCCCACTTATGAGGCTGTGAAGTTGGAGCTCCCTTCACTCCAATATCCAGAACTTGATTTAGGTAGCTGGGGTACATCTCCCCCACCTTCTTTGCTCGAGTCAGTTGATGACTTCTTTCAGTCTCCTACACCAATTAGTACACTAGAGTCAGATTGTTCTTCACCGCAAAATAGTGGCCTGCTGGATGCCTTACTTTATCAGGCAAAGACTCTGAGCAGTTCAAAGAACCATTGTTCTGACAAAAGTTCAAATTCTTCTACAGCAACCCCTGGTGACAGAGCCGACAGCTCTGCTTTAAATGTGTACGAGACAGAATGGGAAGATTATGTTGACCCTGTATCTCCCTTTGGTGCGACTTCAATATTGAATGAGTGCCCTGCTCTTAGAGCCAACGAGAATTCGTTGGATGAACAGCTACCCGTTCTGACATTTACTGGCAATATTCCAAAATTAGAGTTTGTTGATCAGGTTTGGACTCCTGAGAGTGAAAATCAAACCTTGTCCCTGTTGAATATTGCTGGTTCAGACTTCTTGCTTGCTTCAGATTGGCCTGACCTAGGTTCTGGGCATGGCAAGAACCAAGCCATCACAGCTGATACTGCAATGACCCTTCTTGGAGACGATTTTTCCACTGACCAGAAGCATATGACTGCTGGCACTTCTCAGTCAAGTCAGATGTGGGGTTTTGGTTCTTGTGCAACGGCAGCTAACAATGTGCATGGTCTCTGTCAGCTGTCCGATCTTGGTTAA 1668 0.443 MRRVSGNEIEDEVLPNDLSAAQLTDESYEGSAGVVLKKGPWTSTEDDILVDYVNKHGEGNWNAVQKHTGLLRCGKSCRLRWANHLRPNLKKGAFTAEEERFIAELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRRQRAGLPLYPPEVCLQGFQESQRSQNNGGLNGGNKMHPDLLQKNSYETRVAIFDSLKDNQGILPYVPEFSDVSVYDNMLKGLDSSQYCSFRPPTSPKHKRLRESTIPFIDSSDTKKTGLYPFGQFRDNNSDKIAQSFAMQAPLDPAPSSHSSMCYSHSLSNGNSSTSKPTYEAVKLELPSLQYPELDLGSWGTSPPPSLLESVDDFFQSPTPISTLESDCSSPQNSGLLDALLYQAKTLSSSKNHCSDKSSNSSTATPGDRADSSALNVYETEWEDYVDPVSPFGATSILNECPALRANENSLDEQLPVLTFTGNIPKLEFVDQVWTPESENQTLSLLNIAGSDFLLASDWPDLGSGHGKNQAITADTAMTLLGDDFSTDQKHMTAGTSQSSQMWGFGSCATAANNVHGLCQLSDLG 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00017 555 MobiDBLite consensus disorder prediction 380 402 - -
Spst11g00017 555 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 33 85 IPR017930 -
Spst11g00017 555 FunFam MYB-related transcription factor 37 90 - -
Spst11g00017 555 CDD SANT 40 85 IPR001005 -
Spst11g00017 555 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 86 140 IPR017930 -
Spst11g00017 555 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 25 501 - -
Spst11g00017 555 SUPERFAMILY Homeodomain-like 37 132 IPR009057 -
Spst11g00017 555 SMART sant 90 138 IPR001005 -
Spst11g00017 555 SMART sant 37 87 IPR001005 -
Spst11g00017 555 Gene3D - 37 90 - -
Spst11g00017 555 ProSiteProfiles Myb-like domain profile. 86 136 IPR001005 -
Spst11g00017 555 FunFam Transcription factor GAMYB 93 139 - -
Spst11g00017 555 Gene3D - 93 139 - -
Spst11g00017 555 CDD SANT 93 134 IPR001005 -
Spst11g00017 555 MobiDBLite consensus disorder prediction 380 400 - -
Spst11g00017 555 ProSiteProfiles Myb-like domain profile. 36 85 IPR001005 -
Spst11g00017 555 Pfam Myb-like DNA-binding domain 38 85 IPR001005 -
Spst11g00017 555 Pfam Myb-like DNA-binding domain 91 134 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00017 Spst-Chr11 263148 265985 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00017 33 554 MYB Transcription Factor Family AT5G06100 43.797 2.98e-123 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst11g00017 Myb_DNA-binding 1.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g00017 K09422 - gmx:100810415 894.034