Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01859 GAAGCATTTGACCTTTCAGAGGTAACATGTTGGACGATAACGGGGGAGAGGCAGACTGCACGAATAAGAGTATTGTATCTGAAAACTATTCTGAGACAAGATATTGCTTTCTTTGATAAGGAAACAAACACTGGCGATGTCATTGGGAGGATATCAGGTGATATCATTCTTTTACAAGATGCAATGGGTGAGAAGGTTGGGAGATTTGTGCAGCTTGTAGCAACATTTGTTGGAGGATTTGTGATAACGTTTGTGAAAGGGTGGCTTTTTACAGTTGTCATGTTGTCTACTGTTCCACTTCTTGTTTTGTCAGGTGCTGTTATGGCATTCATCATGGAAAGGGTTGCTTCTAGACATCAAATTGCTTATGCAAGAGCTGCTCGTGTAGTTGAACAGACAATTGGTTCAATGAGAACAGTTGCATCCTTTACTGGGGAAAAACAAGCAGTATCCAAGTATGACAAAGTTCTTGCACGTGCTTACAAATCAGGAATTCACGAAGGTTGCATTCTGGGACTCGGTCAGGCTGCAGCATACAAAATGTTCCAGACCATTGAAAGGAATCCAGAGATAGACGCTTATGATCCAAATGGAGTAGTATTACACGATATTCAAGGAGAACTAGAGTTGAGGGATGTTTATTTCAGTTACCCATCAAGACCAGAAGAACTGATATTTGATGGATTCTCTCTTCATATAGCAAGTGGTACAACAACAGCGTTAGTTGGAGAAAGTGGAAGTGGAAAGTCTACAGTTATCAGCTTAGTAGAAAGATTCTATGATCCACAGGCTGGAGAAGTTCTTATTGATGGTATTAACCTGAAAGAATTTCAGCTTCGGTGGATCAGAGGGAAAATAGGTCTTGTCAGCCAGGAGCCGGTGTTGTTTACATCTAGCATTAAGGAAAATATTGCATATGGAAAAGAGGATGCAACAACTGAAGAGATAAGATCTGCACTTGAACTAGCAAATGCTGCTAAATTCATTGATAAGCTTCCACAGGGATTGAACACAATGGTTGGTGATCTTGGAAGCCAGCTATCTGGTGGGCAGAAGCAACGCATTTCCATTGCAAGAGCAATCCTGAAAAATCCTCGAATTCTACTTCTGGACGAAGCCACAAGTGCACTTGACGCAGAGTCAGAAATGAAAGTGCAAGAGGCTCTAAACAGGATCATGGTCAACAGAACTACTGTTGTAGTGGCACATCGCTTGAGCACAGTGAAGAATGCAGATATGATTGCTGTCATTCACAGAGGGAAGATGATTGAGAAAGGAACACAGTCAGAATTACTGAAGGATCCTGATGGAGCGTACTCTCAACTGATTCGCCTACAAGAAATAAGAAATGAGTCAGAAGAAAACGCAGAGCATCACAGCAAGAGTGAAATTTGTGTAGAATCCTTTAGACAATCTAGTGAAAGGAGATCACTTCAAAGATCCATTAGTAGGGGGTCATCCAAAAGGAATAGTGGCAACCACACATCTTCGGTTTCCTTTGGTTTATCCGAAGGAGTTAACATTCCTGATCCTGAACTTGAAAACTCACAACCCAAAGATCAAGCACCAGATGTTCCGCTCAGCCGCCTTGCTTCACTTAATAAGCCAGAGATTCCAGTTCTTCTGATTGGATGTGTAGCTGCCATGGCGAGTGGTCTTATAAATCCAATAAATGGGTTGCTTGTTTCCAGTGCCATCAAGACATTTTATGAACCATTTGATGAGATGAAAAAAGATTCCGAGTTTTGGGCAGTGATGTTTACTACCCTTGCTATTGGAGCTTTTCTGACAAATCTTGGACAACGATACTTTTTTTCTGTGGCAGGATGCAAGTTAATCCATCGTATCGGGCTAATGTGTTTTGAGAAGGTTGTCAACATGGAGATTGGTTGGTTTGATGAACCAGAAAACTCAAGTGGTGCTATCGGTGCCAGACTCTCAGCTGGTGCGGCTTTTGTACGTACCATTGTTGGTGATGCGCTTGCACTATTAGTTCAAAACTTAGCATCGGTATTGGCAGGTTTGATTATTGCTTTCACTGCATCCTGGCGGATGACGTTGATTATTCTTGTCTTGGTTCCCCTTTATGGAATGAATGTATATGTTCAAACGAAATCCATGAAGGGATTCAGTCCTGATGTAAAGATAATGTATGAGGAAGCAAGCCAAGTTGCTAATGATGCAGTTAGAAGCATAAGAACAGTTGCTTCTTTCTGTGCTGAAGACAAGGTTATGGAACTATACAAGAACAAATGTGAGGGGCCGATCAAATCAGGGATACGACTAGGACTTACCAACGGATTAGGATTTGGGGCTTCGCTTTTCTCATTGCAAAGTTTTAATGCAATCAGTTTCTACGCCGGAGCTAGGCTTGTGGAAGCTGGGAAGGCGTCATTCTCTGATGTTTTCCGGGTTTTCTTTGCATTAACTATGGCAACTGCTGGTATTTCCCGATCAAGCTCCCTTTCTACTGATTCAAGCAAAGCCAAGTCAGCCACTGCCTCCATATTTGGAATATTAGATAAGAAGTCAAAAATAGATCCGAGTGATGAGTCTGGCATCACACTGGAGAGCGTCAAGGGAGAAATTGAGCTTCATCATGTGAGCTTCAAGTATCCATCTAGGCCTGACATACAGATTTTCCAAGACCTCAGCTTGGCTATCCATTCTTGTCAGACGGTGGCTCTTGTTGGTGAGAGTGGAAGTGGGAAATCGACAGTGATTGGTTTGTTGCAAAGATTTTATGATCCTGATTCAGGACAAATCACTCTTGATGGGATAGAAATTCGTGAGTTACAACTGAAGTGGTTAAGACAGCAGATGGGTCTTGTAAGCCAGGAGCCACTCTTGTTCAATGAAACCATACGTGCCAACATTGCCTATGGGAAAGGAGGCAATGCTACTGAAGCAGAAATCGTAGCTGCAGCAGAATTGGCCAATGCCCATAAATTCATTAGTGGCTTACAACAGGGTTATGATACTTTGGTCGGGGAGAGGGGAACCCAATTATCTGGTGGGCAGAAGCAACGGGTAGCCATTGCACGCGCCATAATAAAAAGTCCAAAGATATTACTACTCGATGAGGCCACGAGTGCATTAGACGCTGAGTCTGAAAGAGTTGTTCAAGATGCATTGGACAAAGTCATAGTGAACAGAACCACCGTGGTTGTGGCACATCGTCTATCCACAATTAAAAACGCAGATGTGATTGCCGTTGTCAAGAATGGTGTGATAGCGGAGAAAGGGAAGCATGAAACACTCATCAACGTCAGTGGTGGATTTTATGCTTCCTTAGTCAAACTTCACACAAGTGCTTCCGCTCACTAG 3327 0.4268 EAFDLSEVTCWTITGERQTARIRVLYLKTILRQDIAFFDKETNTGDVIGRISGDIILLQDAMGEKVGRFVQLVATFVGGFVITFVKGWLFTVVMLSTVPLLVLSGAVMAFIMERVASRHQIAYARAARVVEQTIGSMRTVASFTGEKQAVSKYDKVLARAYKSGIHEGCILGLGQAAAYKMFQTIERNPEIDAYDPNGVVLHDIQGELELRDVYFSYPSRPEELIFDGFSLHIASGTTTALVGESGSGKSTVISLVERFYDPQAGEVLIDGINLKEFQLRWIRGKIGLVSQEPVLFTSSIKENIAYGKEDATTEEIRSALELANAAKFIDKLPQGLNTMVGDLGSQLSGGQKQRISIARAILKNPRILLLDEATSALDAESEMKVQEALNRIMVNRTTVVVAHRLSTVKNADMIAVIHRGKMIEKGTQSELLKDPDGAYSQLIRLQEIRNESEENAEHHSKSEICVESFRQSSERRSLQRSISRGSSKRNSGNHTSSVSFGLSEGVNIPDPELENSQPKDQAPDVPLSRLASLNKPEIPVLLIGCVAAMASGLINPINGLLVSSAIKTFYEPFDEMKKDSEFWAVMFTTLAIGAFLTNLGQRYFFSVAGCKLIHRIGLMCFEKVVNMEIGWFDEPENSSGAIGARLSAGAAFVRTIVGDALALLVQNLASVLAGLIIAFTASWRMTLIILVLVPLYGMNVYVQTKSMKGFSPDVKIMYEEASQVANDAVRSIRTVASFCAEDKVMELYKNKCEGPIKSGIRLGLTNGLGFGASLFSLQSFNAISFYAGARLVEAGKASFSDVFRVFFALTMATAGISRSSSLSTDSSKAKSATASIFGILDKKSKIDPSDESGITLESVKGEIELHHVSFKYPSRPDIQIFQDLSLAIHSCQTVALVGESGSGKSTVIGLLQRFYDPDSGQITLDGIEIRELQLKWLRQQMGLVSQEPLLFNETIRANIAYGKGGNATEAEIVAAAELANAHKFISGLQQGYDTLVGERGTQLSGGQKQRVAIARAIIKSPKILLLDEATSALDAESERVVQDALDKVIVNRTTVVVAHRLSTIKNADVIAVVKNGVIAEKGKHETLINVSGGFYASLVKLHTSASAH 1108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01859 1108 SMART AAA_5 890 1063 IPR003593 GO:0016887
Spst10g01859 1108 SMART AAA_5 235 429 IPR003593 GO:0016887
Spst10g01859 1108 CDD ABC_6TM_Pgp_ABCB1_D1_like 7 179 - -
Spst10g01859 1108 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 863 1100 IPR003439 GO:0005524
Spst10g01859 1108 Pfam ABC transporter transmembrane region 541 811 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst10g01859 1108 Pfam ABC transporter transmembrane region 8 178 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst10g01859 1108 CDD ABC_MTABC3_MDL1_MDL2 209 446 - -
Spst10g01859 1108 Pfam ABC transporter 882 1031 IPR003439 GO:0005524
Spst10g01859 1108 CDD ABC_6TM_Pgp_ABCB1_D2_like 531 846 - -
Spst10g01859 1108 Gene3D ABC transporter type 1, transmembrane domain 5 174 IPR036640 GO:0005524|GO:0016020
Spst10g01859 1108 Gene3D ABC transporter type 1, transmembrane domain 508 872 IPR036640 GO:0005524|GO:0016020
Spst10g01859 1108 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 177 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst10g01859 1108 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 852 1100 IPR027417 -
Spst10g01859 1108 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 208 444 IPR003439 GO:0005524
Spst10g01859 1108 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 196 446 IPR027417 -
Spst10g01859 1108 ProSitePatterns ABC transporters family signature. 347 361 IPR017871 GO:0005524|GO:0016887
Spst10g01859 1108 FunFam ABC transporter B family member 1 198 447 - -
Spst10g01859 1108 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 542 828 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst10g01859 1108 Gene3D - 886 1107 IPR027417 -
Spst10g01859 1108 FunFam ABC transporter B family member 1 853 1103 - -
Spst10g01859 1108 Gene3D - 198 447 IPR027417 -
Spst10g01859 1108 ProSitePatterns ABC transporters family signature. 1003 1017 IPR017871 GO:0005524|GO:0016887
Spst10g01859 1108 PANTHER ABC TRANSPORTER B FAMILY 517 1101 IPR039421 -
Spst10g01859 1108 CDD ABC_MTABC3_MDL1_MDL2 863 1101 - -
Spst10g01859 1108 FunFam ABC transporter B family member 9 830 852 - -
Spst10g01859 1108 Pfam ABC transporter 227 375 IPR003439 GO:0005524
Spst10g01859 1108 SUPERFAMILY ABC transporter transmembrane region 8 177 IPR036640 GO:0005524|GO:0016020
Spst10g01859 1108 SUPERFAMILY ABC transporter transmembrane region 529 847 IPR036640 GO:0005524|GO:0016020
Spst10g01859 1108 FunFam ABC transporter B family member 1 521 829 - -
Spst10g01859 1108 Gene3D ABC transporter type 1, transmembrane domain 175 463 IPR036640 GO:0005524|GO:0016020
Spst10g01859 1108 MobiDBLite consensus disorder prediction 476 501 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01859 Spst-Chr10 18851094 18865423 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01859 3 178 Calmodulin-binding Proteins AT2G36910 26.554 3.80e-11 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01859 K05658 - gmx:100800034 1677.53