Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01852 ATGGAAAACCGCCACCAAATGCAACAACAACAACGTCCTGGATTGACCTTACTTAGATCCACCAATCTAAATCTAGATCCTGCAACCATCAACACCGGACAGCGTGATGATCCTTCGGTCAAAGAACTGGATTTTTTCCCATCATCTTCACTGTTCAAGAACACCGAATACACTCGAAAAAGAGTTTCTGAGGCTACAAGAAGAGAATTACAAGTTGAGAACTATGTTGGACCAAATCACCAAAAACTACCACCAGCTACAATTTTTCATTGCTTTGCAGAAGCAGAAGCCAATGTGGAGAAAAATGAGATGATGTCTGGTCAACATTTATTGGACCCACAACCATGCACCAAATTAGACGGTAAAGTTGTTGTTGCATCAGTCTCGGATGATAAATCTGGTCTAGAGGCTCGTCCTGATCATGCAGAAGATGCTCTTGAACAATCGTCCTCACAGAGTTTGGGATCATCCAAGAGTCCCAAGATTGAAGAATCTAAGGCCAGTGAGCTTCCTTTCAGAAGAGCCAGAGTTTCTGTGCGTGCAATATCAGAAGCTCCTATGATTTGCGATGGATGTCAATGGAGGAAATATGGGCAGAAAATATCCAAGGGTAATCCTTGTCCTCGTGCCTATTATCGTTGCACCATGGCAGTAGGATGTCCAGTTCGTAAGCAGGTGCAAAGATGCACAGAGGACAAGACTGTGTTGATAACAACTTACGAAGGCAATCATAACCACCCTCTTCCACCTTCAGCCACGGTCATGGCCAATTCTACCTCAGCAGCTGCAGCTATGTTCTTATCTTCTTCAGGTTCAACAACTAGTAACGAAGCACTAAGCAACACTGTAGGGGTATTCTCTTCCATGCCCTACATCTCAATGGCAACCCTCTCAACCTCTGCACCATTTCCCACTATCACCCTTGACATGACCACCAACCCTATGCAACTGCACCGGGACCCCTCTTCTGCTCTCACGTCCCCTCTTCCCTTGCATGCAACTACTTTCCCTCAGCTACTAGGACACCCTGTCATCTTCCCTCACAAGGTGGAACATACACTAGGGCAAAGGCAACCTTCGTTTATCACAGATACGATGAGTGCAGCTATTGCTTCGAATCCAAATTTCACTGTAGCATTAGCAGCAGCTATCTCGTCAATTATTGGAGCTACTAGAGGCAATGATGGAAATAATAACAACAGTAGCAATGGTGGAAGTGTTCTTGCCCTTAATGGGACATCTATGTTGCCTGGATCCACTTAA 1263 0.4505 MENRHQMQQQQRPGLTLLRSTNLNLDPATINTGQRDDPSVKELDFFPSSSLFKNTEYTRKRVSEATRRELQVENYVGPNHQKLPPATIFHCFAEAEANVEKNEMMSGQHLLDPQPCTKLDGKVVVASVSDDKSGLEARPDHAEDALEQSSSQSLGSSKSPKIEESKASELPFRRARVSVRAISEAPMICDGCQWRKYGQKISKGNPCPRAYYRCTMAVGCPVRKQVQRCTEDKTVLITTYEGNHNHPLPPSATVMANSTSAAAAMFLSSSGSTTSNEALSNTVGVFSSMPYISMATLSTSAPFPTITLDMTTNPMQLHRDPSSALTSPLPLHATTFPQLLGHPVIFPHKVEHTLGQRQPSFITDTMSAAIASNPNFTVALAAAISSIIGATRGNDGNNNNSSNGGSVLALNGTSMLPGST 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01852 420 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 122 403 IPR044810 GO:0003700
Spst10g01852 420 Pfam WRKY DNA -binding domain 190 247 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst10g01852 420 MobiDBLite consensus disorder prediction 146 161 - -
Spst10g01852 420 SUPERFAMILY WRKY DNA-binding domain 181 249 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst10g01852 420 MobiDBLite consensus disorder prediction 392 420 - -
Spst10g01852 420 SMART WRKY_cls 188 248 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst10g01852 420 FunFam probable WRKY transcription factor 31 173 250 - -
Spst10g01852 420 ProSiteProfiles WRKY domain profile. 183 249 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst10g01852 420 Gene3D WRKY domain 173 250 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst10g01852 420 MobiDBLite consensus disorder prediction 130 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01852 Spst-Chr10 18770609 18773424 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01852 159 388 WRKY Transcription Factor Family AT4G04450 54.400 2.28e-73 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Spst10g01852 WRKY 4.6e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01852 - - gmx:100785933 483.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g01852 10 18770609 18773424 Spst10g01852 10 18770609 18773424 ECH
Spst1g02409 1 32661097 32671626 Spst10g01852 10 18770609 18773424 PCT