Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01850 ATGGGCAAAGCCTCTAGTTCTTCTTCCTCTTCTATCACCAGCTGCAGGAACAACCCTTCCAATTCATCTGCATCCTCTCTCACACACCAACATGGTCAAGACCTTCGCACAGATCTTAGGCTTGGACTCAGCATTTCCGCCACTCAACATGTTGGCTCGTCCAGTTCAGGGGGGCACTGGCAACCGATGCAGCCGCATCTAAACAGTTTTTCCCAAGCTGAAGTGAATGATTGCAGCGATCATACCAGCTTCTTTGTGAAGGTGTACATGGAAGGTATTCCAATTGGTAGAAAACTCAATTTGTTAGCTCATGATGGCTACCACGAGTTAGTAAAGACCCTGGAACAGATGTTTGACACTACCATTCTGTGGGGAACTGAGATGGATGGAGTGCAACCAGAGAGATGCCATGTTCTAACTTATGAAGATGGAGAAGGAGATTTGATCATGGTTGGCGATGTTCCTTGGGAGATGTTCTTATCAGCTGTAAAGAGGTTGAAGATCACAAGGGTCGAGACATTTGGGTGA 528 0.4659 MGKASSSSSSSITSCRNNPSNSSASSLTHQHGQDLRTDLRLGLSISATQHVGSSSSGGHWQPMQPHLNSFSQAEVNDCSDHTSFFVKVYMEGIPIGRKLNLLAHDGYHELVKTLEQMFDTTILWGTEMDGVQPERCHVLTYEDGEGDLIMVGDVPWEMFLSAVKRLKITRVETFG 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01850 175 SUPERFAMILY CAD & PB1 domains 79 169 - -
Spst10g01850 175 Gene3D - 77 174 - -
Spst10g01850 175 MobiDBLite consensus disorder prediction 1 31 - -
Spst10g01850 175 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 15 - -
Spst10g01850 175 ProSiteProfiles PB1 domain profile. 83 173 IPR000270 GO:0005515
Spst10g01850 175 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 36 171 IPR003311 GO:0005634|GO:0006355
Spst10g01850 175 Pfam AUX/IAA family 74 170 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01850 Spst-Chr10 18748771 18749870 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01850 87 168 B3 DNA Binding Superfamily AT4G23980 40.244 5.69e-13 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Spst10g01850 AUX_IAA 1.8e-28 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01850 K14484 - gmx:100781660 322.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g01850 10 18748771 18749870 Spst10g01850 10 18748771 18749870 ECH
Spst1g02406 1 32644049 32644963 Spst10g01850 10 18748771 18749870 PCT