Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01846 ATGCCTGATTCCACCCGGCCAGGGATGAGTATAAGCTCTTCTTATCTAGATTCTATTTATGGTAAAGGTTCCCTTGAACTTGTATGGGAAAATGGTCAACTTCACGTGCAGCAGTCTGAGGGGTATTCCATTAAAGGAAATGATGACGGTGCCTTCAATGCAAAAAGTAGAAGGGTGAGTTCACTGTACTCTGTCATGGACTTTCCCGTTCAAAAGAACTCTCCTCTGGACAATTCACAACCAAATTCTCGTCGAAGTTCTTCTCATCTTGCAACAGAGGGAAGCTCGGTGATAAACTCGTCTAATGGATCAGAAGGAAGCAAAAACCCTTTGATTTTTTATGCATCAAACCTTCTTCCTGATGAGCAATCTGAAGCTGTTGGTCATAATAGTGCTCTCAGTACTCGCGAATCTCGTGGTCAATATTGTAACCAAACCTCAAGCTCAGTAGGAGTTAAAGGAAAGGGAACAGCTGATACTAAGTACTGTGATGAAGCCTTGTTAGAATCCTCTTCCCTATGCTCACTTGGAGACTCAAATAACAGAAACGTTTGTAGCAGGAAACATGATTACATCGATGACTCAGCGTATATGAGTGATGTAAGTGGAACCAATGATGAAGAACCAGAAGATGTAGTGAAGGAAAAGCCTGCTAAGGAAGCCGCCAGAGTGAAGAGAAGTAGGAATACAGAAAAACGAAGAGATAAGATCAATAAGAGGATGCATATATTGAAGGAGCTGATACCGAATTGTAATAAGACGGACAAAGCTTCAATGCTTGATGATGCTATTGAATATCTTAAGACCCTCAAGCTTCAGTTACAGATTATGTCAATGGGTAGTGGGTTTTGCATGCCTTTTCAGATGTTACCTAATGCTGATCATCACATTGTCAACAGTCCCCATTTACAGCAGTTAATGATGGGGTTCAGGCCAGGCACAACCATCCCTTGCTGTCTGCCTCAGTTCCCTATGACACCTTTGCCTGCAATCACTGACAACAGAGTTCAAATGTTTCCTTTCCCCACCCAAGTGCCAATCATGCCCATTTCTCATGCATCTTTCATTCCAATGGTTGGAAATCCTTCTACACAAATCCCTCCTGCAACTAGCACAGCTTCCAACCTGAATGAAAACCCTGCTTCTTCCCAGTTAACTACTCTATTGGCCTCACTCCCCGAGAATTCATATCTTAGTGGACAAGCTGAACACGCAACAAAGCAAGCATTAAATCAGGTTTCCCCTCGCTACTAG 1254 0.4282 MPDSTRPGMSISSSYLDSIYGKGSLELVWENGQLHVQQSEGYSIKGNDDGAFNAKSRRVSSLYSVMDFPVQKNSPLDNSQPNSRRSSSHLATEGSSVINSSNGSEGSKNPLIFYASNLLPDEQSEAVGHNSALSTRESRGQYCNQTSSSVGVKGKGTADTKYCDEALLESSSLCSLGDSNNRNVCSRKHDYIDDSAYMSDVSGTNDEEPEDVVKEKPAKEAARVKRSRNTEKRRDKINKRMHILKELIPNCNKTDKASMLDDAIEYLKTLKLQLQIMSMGSGFCMPFQMLPNADHHIVNSPHLQQLMMGFRPGTTIPCCLPQFPMTPLPAITDNRVQMFPFPTQVPIMPISHASFIPMVGNPSTQIPPATSTASNLNENPASSQLTTLLASLPENSYLSGQAEHATKQALNQVSPRY 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01846 417 CDD bHLH_AtPIF_like 232 283 IPR047265 -
Spst10g01846 417 MobiDBLite consensus disorder prediction 71 103 - -
Spst10g01846 417 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 221 270 IPR011598 GO:0046983
Spst10g01846 417 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 220 281 IPR036638 GO:0046983
Spst10g01846 417 MobiDBLite consensus disorder prediction 214 228 - -
Spst10g01846 417 Gene3D - 217 278 IPR036638 GO:0046983
Spst10g01846 417 SMART finulus 228 276 IPR011598 GO:0046983
Spst10g01846 417 MobiDBLite consensus disorder prediction 125 154 - -
Spst10g01846 417 MobiDBLite consensus disorder prediction 214 234 - -
Spst10g01846 417 PANTHER TRANSCRIPTION FACTOR PIF3 82 395 IPR044273 GO:0003700|GO:0006355
Spst10g01846 417 MobiDBLite consensus disorder prediction 125 155 - -
Spst10g01846 417 Pfam Helix-loop-helix DNA-binding domain 232 270 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01846 Spst-Chr10 18721588 18723352 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01846 25 341 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G46970 29.810 2.98e-27 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst10g01846 HLH 5.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01846 K12126 - gmx:100818543 526.168
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g01846 10 18721588 18723352 Spst10g01846 10 18721588 18723352 ECH
Spst1g02404 1 32632885 32636492 Spst10g01846 10 18721588 18723352 PCT