Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01842 ATGGGAAGACACTCTTGCTGTTACAAGCAGAAGCTTCGGAAGGGTCTTTGGTCTCCTGAGGAGGATGAAAAACTTTTGAGGCATATTACAAAGTATGGTCATGGATGTTGGAGTTCTGTGCCTAAGCAAGCAGGTTTGCAAAGGTGTGGCAAGAGCTGCAGGCTTAGGTGGATCAACTACCTAAGGCCTGATTTAAAGAGAGGAACATTCTCACAAGAAGAAGAAAACCTTATCATTGAACTTCATGCAGTATTAGGGAACAGGTGGTCTCAAATTGCGGCACAGTTGCCTGGGAGGACTGACAATGAAATAAAGAATCTGTGGAACTCTTGCTTGAAGAAGAAACTGAGACAAAAAGGCATAGACCCTGTCACACATAAACCACTGTCCGAAGTTGAGAATGGAGAGGACACTGGTAAGAGTCAAGGGAAGGCACTAGAAATTTCAAATGAATTGAACCTCCTGAAATCAGAGAGCTCCAAATCAGATTCAGCTTCCTATGAGCAGAGAACATCAATTTCTCCAAAAGCCTATGCACCCGAGATGGATGGTTCGTGCAGCTCCAAGATTTACTGCAGAACTGACAGCAATTTCGTAACCAACAACTGTTACAATTACAACAAAGACTTGTTCCTAGACAGGTTTATGAGTAGTAGCCGCCAAGAGAGCTACACCACTAGTTGCCAGCCCTCAGATTTGATGGGAAATTTTCCAATTCAGATGAGTTATGCAACCAATGACTGTCTCCCTAATGATTCAAACTCTAACCATTGGTTCAGCCAAACTGGAAGACCTTTCGATATGAACTCTGAATTTCCTTTCAATGCTGCCACTTCTGTTAATCCTACACCTACAACCAATTTGTTTCTTCCTAATTCATTTTGCTACAAGCCTTCACTTGCTGTTCCTTCTGACAATGTTTCTACAGCCTATGGATCTCATTACTGGGAAGCCAGTGCCTCCAACAATAGCAATAGCAGCATTAGGAGTAATAGCAGCACAGATTTGAGAAGTAGCAGCCCCTTAAACATCTTTTCTTCTTGGGGATTGGCAGATTGTAGCACCTCTACTACTAAAGACGCACAAATTCATATGATGGAGAATCATACAGAAGAAGCTAAGTGGGACGAGTACCTTCACAACCCAATCTCAATTCTGGCTTCTGTACAAAATCAAGCTCCCGAATCCTTGTGCAACGAGATAAAAACAACCATGCATTTGGTACCTGATACTTTAGGGGCTATGTTGCCTCATAGCACCAAGCAGCAAGAACCGTCTCAAACCTCTAGTATCTTTTCTAAGGACATCCAGAAGCTAAGGGCAGCCTTTGGACACATGTAA 1341 0.4288 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQEEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQKGIDPVTHKPLSEVENGEDTGKSQGKALEISNELNLLKSESSKSDSASYEQRTSISPKAYAPEMDGSCSSKIYCRTDSNFVTNNCYNYNKDLFLDRFMSSSRQESYTTSCQPSDLMGNFPIQMSYATNDCLPNDSNSNHWFSQTGRPFDMNSEFPFNAATSVNPTPTTNLFLPNSFCYKPSLAVPSDNVSTAYGSHYWEASASNNSNSSIRSNSSTDLRSSSPLNIFSSWGLADCSTSTTKDAQIHMMENHTEEAKWDEYLHNPISILASVQNQAPESLCNEIKTTMHLVPDTLGAMLPHSTKQQEPSQTSSIFSKDIQKLRAAFGHM 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01842 446 MobiDBLite consensus disorder prediction 123 140 - -
Spst10g01842 446 PANTHER MYB DOMAIN PROTEIN 55 1 359 - -
Spst10g01842 446 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Spst10g01842 446 SMART sant 13 63 IPR001005 -
Spst10g01842 446 SMART sant 66 114 IPR001005 -
Spst10g01842 446 FunFam Myb transcription factor 11 67 - -
Spst10g01842 446 MobiDBLite consensus disorder prediction 123 143 - -
Spst10g01842 446 CDD SANT 17 61 IPR001005 -
Spst10g01842 446 Gene3D - 68 140 - -
Spst10g01842 446 Gene3D - 11 67 - -
Spst10g01842 446 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Spst10g01842 446 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Spst10g01842 446 CDD SANT 69 109 IPR001005 -
Spst10g01842 446 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Spst10g01842 446 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Spst10g01842 446 FunFam MYB transcription factor 68 140 - -
Spst10g01842 446 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Spst10g01842 446 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01842 Spst-Chr10 18692602 18694176 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01842 1 159 MYB Transcription Factor Family AT4G01680 82.390 2.20e-93 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst10g01842 Myb_DNA-binding 2.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01842 K09422 - gmx:100782199 758.059