Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01827 ATGGGAGAAATAATTGAGGAAAAAAGAACAGATCTGGGAAAAGTTGTGGGAAGAGAAGGAACAGGAAAAACAGAGGAAGATGCAGTGGGTAACAGATGCTCACATGCACAACGATATGACCCGGAAAAGATCCAAGTTGAAATTCAAGTATTTCTCAATTCAAGGAGACAGAGAGACACACCTCAGCGAGGTTTAAAAGGCCATACTTTCGGAGGCAACAAAGTGCGTGGCCTTATCCCCTCGCCGCTTCTTCTTCTTCTTCCCAACACAAACATGGCTTCTTCTTCCACCATACCTCTCTCTTCTTCCATTTCCATATTCAAAACCCCGTCTCTCCAATTCCTCAGAAGACCAACCACCTCCGTTTCTTTCAACACTCTTACCAGTAACGCCACACTCTCTTCCGTTCCTTCTGCCATTGCCACCCCCACTTCTTCCATTCTCACCCAACAACCCTTCCAGGGTTTAACTCTGGAGGACGTTGACAATCACCACCAATTTGGCGATGAACGCCAACCGGACACCACCCCTCTCCACGAACTCGACATTTCCAAGTTGTCTTTACCTTCCTCCCTCGTCCAAGCCCTACAAAAACGTGGAATCACCAGCCTCTTCCCCATTCAGAGAGCTGTGTTGCTGCCTGCACTAGAAGGTAGAGATATCATTGCTCGAGCAAAGACTGGCACTGGCAAAACATTAGCATTCGGAATTCCAATTCTCAAAGGCCTTACTGATGATGATGAACAAAGTTCTCACAGGAGGCATGGGAGACTTCCTAAAGCCTTGGTCCTAGCACCTACTAGGGAGTTGGCCAAGCAAGTTGAGAAGGAGATACAAGAATCTGCACCTTACCTGAAAACGGTTTGTGTTTATGGGGGTGTTTCTTATGTAACACAGCAGAGTGCGCTTTCGCGTGGTGTTGATGTGGTGGTTGGAACTCCGGGTAGAATTATCGATCTAGTGAATGGAGATAGCCTTAAACTGAGTGAGGTTCAGTATTTGGTGCTTGATGAAGCTGATCAGATGCTTGCTGTTGGGTTTGAGGAGGATGTGGAGGTCATTTTGGATAAGGTCCCCTCGCAGCGCCAGACCATGCTATTTTCTGCTACCATGCCTGGTTGGGTCAAGAAACTGTCCAGAAAGTATTTGAAGACTCCTTTGACAATTGATTTGGTTGGCGAACAAGAAGAGAAACTTGCCGAAGGGATCAAACTTTATGCTTTATCAGCCACTGCCACTTCAAAACGGATAGTTCTTTCTGATCTTATAACTGTTTATGCAAAGGGTGGAAAGACTATTGTTTTTACGAAGACAAAAAAGGATGCTGATGAAGTATCATTGGCATTAACGAGTAGTATAGCTTCTGAAGCACTGCATGGTGATATATCTCAGCATCAGAGAGAGAGAACATTGAATGGTTTTCGCCAAGGGAAATTCACAGTGCTTGTTGCCACTGATGTTGCTGCTCGTGGACTTGATATTCCCAATGTTGATTTGGTTATACACTATGAACTTCCCAATGATGCTGAGACTTTTGTTCATCGTTCTGGTCGTACTGGGCGTGCAGGAAAAGAGGGTACAGCCATTTTGATGTACACCAGTAGCCAGAGGAGAACAGTTAGATCCCTTGAGCATGATGTTGGCTGCAAATTTGATTTTATTAGTCCACCAGCTATGGAAGAAATTTTGGAGTCATCAGCTGAGCAAGTTGTTGCTACACTTAATAGAGTTCATCCAGAATCTGTTGAATTTTTCACTGCAACTGCAGAAAAACTGGTTGAAGAACAAGGAGCAAGGGCCCTTGCTGCTGCTCTGGCACAGATGAGTGGATTCTCTCGACCTCCATCATGTCGGTCTCTTATCAATCATGAACAGGGATGGATTACATTGCAACTGACTCGAGATTCAGATACTTCTGGAAGATTATTTTCTGCAAGATCTGTTACTGGGTTTCTTTCTGATGTTTATTCTCCTGCTGCTGATGAAGTCGGAAAAATACATTTAATTGCAGATGAGAGGATTAAAGGAGCTGTTTTTGATCTTCCGGAGGAAATTGCTAAAGAGTTACTCAAAAAGGAACTGCCATCTGGAAACACTATTTCCAAAACCACCAAGTTACCTCCTTTGCAAGACGATGAACCTGCAAGTGATTTCTATGGAAAGTTTTCTGACAGAGACAGAAGTAACCGAAGAGGTTCTAATTCTAGGGATCAAAGAGGTTTTAAAAGTTCACGGGGATGGGAAGGAGGCCAAGACACTGATGATGAGTTTGGACGAGGCGGTAGAAATTTCAGATCAGGCAACAACAGGTCTCGAATGGGTAAAAACAGTGGCGATGACTGGCTAATTGGAGGTGGACGATCAAACAGGTTTTCATCATCAAACAGAGGCGGGCACGGAGGGGCATGTTTTAATTGTGGACAACCTGGCCATCGAGCATCAGATTGTCGCAACAAACGAAACTTTTTCTAG 2472 0.4454 MGEIIEEKRTDLGKVVGREGTGKTEEDAVGNRCSHAQRYDPEKIQVEIQVFLNSRRQRDTPQRGLKGHTFGGNKVRGLIPSPLLLLLPNTNMASSSTIPLSSSISIFKTPSLQFLRRPTTSVSFNTLTSNATLSSVPSAIATPTSSILTQQPFQGLTLEDVDNHHQFGDERQPDTTPLHELDISKLSLPSSLVQALQKRGITSLFPIQRAVLLPALEGRDIIARAKTGTGKTLAFGIPILKGLTDDDEQSSHRRHGRLPKALVLAPTRELAKQVEKEIQESAPYLKTVCVYGGVSYVTQQSALSRGVDVVVGTPGRIIDLVNGDSLKLSEVQYLVLDEADQMLAVGFEEDVEVILDKVPSQRQTMLFSATMPGWVKKLSRKYLKTPLTIDLVGEQEEKLAEGIKLYALSATATSKRIVLSDLITVYAKGGKTIVFTKTKKDADEVSLALTSSIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLVIHYELPNDAETFVHRSGRTGRAGKEGTAILMYTSSQRRTVRSLEHDVGCKFDFISPPAMEEILESSAEQVVATLNRVHPESVEFFTATAEKLVEEQGARALAAALAQMSGFSRPPSCRSLINHEQGWITLQLTRDSDTSGRLFSARSVTGFLSDVYSPAADEVGKIHLIADERIKGAVFDLPEEIAKELLKKELPSGNTISKTTKLPPLQDDEPASDFYGKFSDRDRSNRRGSNSRDQRGFKSSRGWEGGQDTDDEFGRGGRNFRSGNNRSRMGKNSGDDWLIGGGRSNRFSSSNRGGHGGACFNCGQPGHRASDCRNKRNFF 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01827 823 CDD GUCT_Hera 618 697 - -
Spst10g01827 823 Gene3D - 409 609 IPR027417 -
Spst10g01827 823 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 212 389 IPR014001 -
Spst10g01827 823 CDD SF2_C_DEAD 415 532 - -
Spst10g01827 823 Gene3D - 182 393 IPR027417 -
Spst10g01827 823 FunFam Nucleolar RNA helicase II 411 601 - -
Spst10g01827 823 Pfam Zinc knuckle 802 817 IPR001878 GO:0003676|GO:0008270
Spst10g01827 823 Pfam DEAD/DEAH box helicase 205 378 IPR011545 GO:0003676|GO:0005524
Spst10g01827 823 SMART c2hcfinal6 802 818 IPR001878 GO:0003676|GO:0008270
Spst10g01827 823 CDD DEADc 192 390 - -
Spst10g01827 823 SUPERFAMILY Retrovirus zinc finger-like domains 783 821 IPR036875 GO:0003676|GO:0008270
Spst10g01827 823 Pfam GUCT (NUC152) domain 610 710 IPR012562 GO:0003723|GO:0004386|GO:0005524
Spst10g01827 823 SMART ultradead3 200 406 IPR014001 -
Spst10g01827 823 SMART helicmild6 443 523 IPR001650 -
Spst10g01827 823 ProSiteProfiles Zinc finger CCHC-type profile. 803 818 IPR001878 GO:0003676|GO:0008270
Spst10g01827 823 Gene3D - 778 822 - -
Spst10g01827 823 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 260 543 IPR027417 -
Spst10g01827 823 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 177 766 - -
Spst10g01827 823 FunFam ATP-dependent RNA helicase RhlE 173 392 - -
Spst10g01827 823 MobiDBLite consensus disorder prediction 697 798 - -
Spst10g01827 823 MobiDBLite consensus disorder prediction 717 761 - -
Spst10g01827 823 Pfam Helicase conserved C-terminal domain 419 523 IPR001650 -
Spst10g01827 823 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 418 563 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01827 Spst-Chr10 18596506 18604220 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01827 186 544 Eukaryotic Initiation Factors Gene Family AT1G72730 35.537 4.01e-61 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01827 - - gmx:100815040 1199.5