Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01822 ATGAAGGAGAACAAATTCGAGAGCTACTTCGGTCGCAAGATTGCCATTGACGCCAGCATGAGCATTTACCAGTTCCTTATTGTCGTCGGAAGAAGTGGAACCGAGATGCTCACTAATGAAGCCGGTGAAGTTACTAGCCATTTGCAAGGGATGTTTTCGCGGACAATCAGACTTCTAGAAGCCGGGATCAAGCCACTATATATTTTTGATGGGAAGCCACCAGATTTGAAGAGACAAGAGCTGGCAAAACGTTACTCCAAGAGGGCCGATGCTACTGAAGATTTATCAGAAGCCTTAGAGACTGGCAATATAGAAGACATTGAAAAATACAGTAAACGAACGGTGAAGGTGACAAAGCAACATAACGAAGACTGCAAAAAACTTTTAAGACTTATGGGTGTGCCCGTTGTTGAGGCACCCTCAGAAGCAGAGGCTCAATGTGCTGCACTTTGCAAAGCTGGAAAGGTTTATGCTGTGGCTTCTGAAGACATGGATTCCTTAACATTTGGAGCTCCTAAATTTCTTCGCCACCTAATGGATCCAAGCTCCAAAAAAATTCCAGTGATGGAATTTGAAGTTGCAAAGATTTTGGAGGAGCTAAATCTGACCATGGACCAATTTATTGACTTATGCATTCTTTCTGGCTGTGATTATTGTGAAAGCATTCGAGGAATTGGGGGATTGACAGCTCTGAAACTCATACGTCAACATGGCTCTATTGAAAATATGCTGGAAAATATAAACAAAGAGAGGTACCACATACCAGATAATTGGCCGTATCAGGAGGCTCGGCGACTTTTTAAAGAACCATTGGTCTTAACTGATGAAAAGGAACTTGATATTAAGTGGTCTGCTCCAGATGAAGAAGGTTTAATAACATTTCTAGTAAATGAGAATGGCTTCAACACTGATAGAGTGACTAAGGCAATAGAAAAAATTAAAGCAGCAAAGAGCAAGTCATCACAAGGCCGATTGGAATCATTTTTTAAGCCAACACCAAATTCATCAGTACCAATCAAACGCAAGGAAACACCAGGGAAAAATGATGCTAAAGAGACTAACAAGAAGGCCAAGGGTAGTGGTGTTAGCATGAAGGAGGATCAACTTGCAATACTCACGTGTGTAGTCTTTCAAATTTGTATTATGTCTGACCATACCATGAAGCTGGCCAACTTGGTTCTTCTCGTGACTCTGGTTCTTCTCTTAGCCACCTCTATCTCATCAGATCCTGATCTTCTTCAAGACCTGTGTGTCGCCGACCTTGCCTCAGGTGTGAAAGTGAATGGATTCACCTGCAAAGAAGCATCTAAGGTGAATGCCTCAGATTTCTTTTCCAACATACTAGCCAAACCAGGAGCCACCAACAACACCTTTGGCTCCTTGGTGACTGGAGCCAATGTTGAGAAAGTCCCAGGACTCAACACACTTGGTGTCTCTGTGTCAAGGATTGACTATGCCCCAGATGGCATCAACCCTCCTCACACTCACCCTCGTGCCACTGAGATTGTGTTTGTGCTTGAAGGGCAACTAGATGTGGGGTTCATAACCACTGCCAATGTGCTCATTTCAAAGACCATTAACAAGGGTGAAATATTTGTGTTCCCAAAAGGCTTGGTTCACTTCCAAAAGAACAATGCCAATGTCCCTGCTGCTGTCATTTCAGCCTTCAATAGCCAACTTCCAGGGACACAGTCCATTGCTACAACCTTATTTGCTTCCACACCATCACTTCCAGACCATGTCTTGACCAAGACCTTCCAGGTTGGAACCAAGGAGGTTCAGAAAATCAAAACTAGGCTTGCACCTAAAAAGTAA 1815 0.4331 MKENKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFSRTIRLLEAGIKPLYIFDGKPPDLKRQELAKRYSKRADATEDLSEALETGNIEDIEKYSKRTVKVTKQHNEDCKKLLRLMGVPVVEAPSEAEAQCAALCKAGKVYAVASEDMDSLTFGAPKFLRHLMDPSSKKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCESIRGIGGLTALKLIRQHGSIENMLENINKERYHIPDNWPYQEARRLFKEPLVLTDEKELDIKWSAPDEEGLITFLVNENGFNTDRVTKAIEKIKAAKSKSSQGRLESFFKPTPNSSVPIKRKETPGKNDAKETNKKAKGSGVSMKEDQLAILTCVVFQICIMSDHTMKLANLVLLVTLVLLLATSISSDPDLLQDLCVADLASGVKVNGFTCKEASKVNASDFFSNILAKPGATNNTFGSLVTGANVEKVPGLNTLGVSVSRIDYAPDGINPPHTHPRATEIVFVLEGQLDVGFITTANVLISKTINKGEIFVFPKGLVHFQKNNANVPAAVISAFNSQLPGTQSIATTLFASTPSLPDHVLTKTFQVGTKEVQKIKTRLAPKK 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01822 604 MobiDBLite consensus disorder prediction 324 341 - -
Spst10g01822 604 CDD H3TH_FEN1-Euk 205 273 - -
Spst10g01822 604 Gene3D - 1 205 - -
Spst10g01822 604 FunFam Flap endonuclease 1 202 269 - -
Spst10g01822 604 CDD PIN_FEN1 1 315 - -
Spst10g01822 604 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 129 146 IPR006084 -
Spst10g01822 604 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 11 25 IPR006084 -
Spst10g01822 604 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 150 170 IPR006084 -
Spst10g01822 604 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 207 222 IPR006084 -
Spst10g01822 604 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 65 84 IPR006084 -
Spst10g01822 604 FunFam Flap endonuclease 1 1 205 - -
Spst10g01822 604 Pfam XPG I-region 133 217 IPR006086 GO:0004518
Spst10g01822 604 SMART HhH_4 204 237 IPR008918 GO:0003677|GO:0003824
Spst10g01822 604 FunFam germin-like protein subfamily 2 member 1 408 602 - -
Spst10g01822 604 Gene3D - 206 269 - -
Spst10g01822 604 SMART xpgineu 130 202 IPR006086 GO:0004518
Spst10g01822 604 Hamap Flap endonuclease 1 [fen]. 1 330 IPR023426 GO:0016788
Spst10g01822 604 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 4 357 IPR006084 -
Spst10g01822 604 CDD cupin_OxOx 409 600 IPR001929 GO:0030145
Spst10g01822 604 Pfam XPG N-terminal domain 2 90 IPR006085 GO:0004518
Spst10g01822 604 ProSitePatterns XPG protein signature 2. 133 147 IPR019974 GO:0016788
Spst10g01822 604 SUPERFAMILY PIN domain-like 5 217 IPR029060 -
Spst10g01822 604 SMART xpgn3 1 91 IPR006085 GO:0004518
Spst10g01822 604 ProSitePatterns Germin family signature. 489 502 IPR019780 GO:0030145
Spst10g01822 604 ProSitePatterns XPG protein signature 1. 63 77 IPR019974 GO:0016788
Spst10g01822 604 Gene3D Jelly Rolls 408 602 IPR014710 -
Spst10g01822 604 MobiDBLite consensus disorder prediction 342 359 - -
Spst10g01822 604 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 202 337 IPR036279 -
Spst10g01822 604 SMART Cupin_1_3 445 594 IPR006045 -
Spst10g01822 604 Pfam Cupin 448 594 IPR006045 -
Spst10g01822 604 MobiDBLite consensus disorder prediction 324 359 - -
Spst10g01822 604 SUPERFAMILY RmlC-like cupins 409 599 IPR011051 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01822 Spst-Chr10 18551936 18560669 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01822 1 344 Core DNA Replication Machinery Family AT5G26680 86.628 0.0 637
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01822 K04799 - gmx:100792878 657.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02381 1 32392283 32393450 Spst10g01822 10 18551936 18560669 PCT