Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01816 ATGGGAAGACACTCTTGCTGCTACAAACAGAAGTTACGGAAAGGCCTTTGGTCTCCAGAGGAAGACGAGAAGCTTCAGAATTACATCACCAAACATGGTCATGGATGTTGGAGCTCAGTCCCCAAACTTGCTGGTCTGCAGAGGTGTGGGAAGAGTTGTAGGTTGAGGTGGATAAATTACCTGAGGCCCGATTTGAAGAGAGGAGCATTCTCACAGCAGGAAGAGAACATGATCATTGAACTCCATGCAGTCCTTGGAAACAGGTGGTCTCAGATTGCAGCACAGTTACCGGGAAGAACTGACAATGAGATTAAAAACCTATGGAACTCATGCCTCAAGAAGAAGCTGAGGCAAAGAGGCATTGACCCAAACACCCACAAACCACTCTCTGAGGTTGAGAACGACAAGGACATGCCACCCTCAACCGACAAAGGCAATCAGAAAGCGTCAGTGGCATCCAATGAATTAAGTTTGGTTGATCAGCCAGCAAAAGCCATGCCTTCAGAGAGAGACCCTCTTGAAGTTTCCACTAGTTCAAACCAGGAACTATTCCTTGATAGGTTTGGTGCTACCTGCCATGACAACAGATGCAGACCCTCTGATATGGTGGGATCATACTTCTCCTTCCAGCACTTGAATTATGGAACAACAAACATGGGCCTCTCTGCAAACCCCAACAGCTCTCTTTGTTTCATTCCACCCTCCACTTCTTCAGACCTTAACAATTCCCCCATATCCTCCTCTATGCTCCATTCAATTTTCCCAACACATGTGAAGCTCCAATCTAATAACAACCCTTCCATATCCTCTGATGCGGTTCAAAACTGGGAATGCAACAACACAGTCAAAAGCAATGCGAGTATGCAGTTACAAAGCAGCACAAACTTCCTTGACAACACGTGGGGGGTCGCAGAGTCTATGAAGGTTAACATTAACAAAGATGCTCAAGTGCCCCTTCAAGCAGAACAAGAGGATCTAAAATGGTCCGAGTATCTGAACACCCCGTTTATTCTGGGCAACACACCGCAGAATCAAATCCAAACCTCCCAAACTATCTACAGTGAGGTTAAGCCTGAAACAGGATTCATAACAGATAAGTCATGTACTAGTTGGTACCATCAGCCACCAGCTTTTCAACTTTCCGATATTTATAGCAAGGATATGCAGAGATTTTCAGTGACTTTTGGACAAACCCTTTAA 1200 0.4525 MGRHSCCYKQKLRKGLWSPEEDEKLQNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQQEENMIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKPLSEVENDKDMPPSTDKGNQKASVASNELSLVDQPAKAMPSERDPLEVSTSSNQELFLDRFGATCHDNRCRPSDMVGSYFSFQHLNYGTTNMGLSANPNSSLCFIPPSTSSDLNNSPISSSMLHSIFPTHVKLQSNNNPSISSDAVQNWECNNTVKSNASMQLQSSTNFLDNTWGVAESMKVNINKDAQVPLQAEQEDLKWSEYLNTPFILGNTPQNQIQTSQTIYSEVKPETGFITDKSCTSWYHQPPAFQLSDIYSKDMQRFSVTFGQTL 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01816 399 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Spst10g01816 399 SMART sant 13 63 IPR001005 -
Spst10g01816 399 SMART sant 66 114 IPR001005 -
Spst10g01816 399 Gene3D - 11 67 - -
Spst10g01816 399 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Spst10g01816 399 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Spst10g01816 399 MobiDBLite consensus disorder prediction 119 176 - -
Spst10g01816 399 CDD SANT 17 61 IPR001005 -
Spst10g01816 399 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Spst10g01816 399 FunFam Myb transcription factor 11 67 - -
Spst10g01816 399 FunFam MYB transcription factor 68 140 - -
Spst10g01816 399 MobiDBLite consensus disorder prediction 119 142 - -
Spst10g01816 399 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Spst10g01816 399 MobiDBLite consensus disorder prediction 143 157 - -
Spst10g01816 399 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Spst10g01816 399 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Spst10g01816 399 CDD SANT 69 109 IPR001005 -
Spst10g01816 399 Gene3D - 68 139 - -
Spst10g01816 399 PANTHER MYB DOMAIN PROTEIN 55 1 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01816 Spst-Chr10 18507006 18508485 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01816 1 399 MYB Transcription Factor Family AT1G09540 49.289 1.47e-116 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst10g01816 Myb_DNA-binding 2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01816 K09422 - gmx:778072 652.129