Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01812 ATGCCTTTGTATGAGTTATACCGTCTGGCTAGAGAGAAGCTTGGTAGAGAGAATAACAGCACACGTGCATCTGATCAATGTTCTTCGCCTGAGAATGATTTTTTTGAGCTAGTTTGGGAGAATGGTCAGATTTCAAGTCAGGGTCAGGCTAGTAGAGTTAGAACGAGCCCATCTTGCAGGAGTTTGCCATCTCACTGCTTACCATCTCACAGTCCCAAGGGCAGAGAGAAAGATGTTGGATATGGTGCCAACCGGATGGGAAAATCTAGGGATTTAGACTCTGGATTGAATGAAATTTCAATGTCGGTGCCGTCCCGTGAAGTTGATTTCTGTCAAGACGAAGATGTGTTACCTTGGTTTGATTACACAATGGATGGTTCTTTGCAACATGACTATGGTTCTGATTTCCTACCTGCCTCAACTAGTTTTACTGTATTGGATAAAAAAAGTAATGGCAATATGGCTTTGAGGGATTCTCATAAAACTTCTGTAGAACAAGGAAACGTTTTCAAGGCTTCTTCAGCTGAACAGGTTGAGACTGCCGGACCTAAAGCTAGCACCAGTCAGTTATACCCTCCATCATTGCATCATTGTCAAGTATCTTCTAGATCCAGAGCATCAGATATAACTGAAAATAACAATACTAGTAATGCAAATCAGGATGCGTCTTATGGCGAAATTACTCGTTTTCTATCTTCCTCAAGTGATTTTTGTAGCTCAAAGGGGCAGACGCAAGATCCACCTATGCCTGGCAATGGTTCCAGTTCCACCATAATGAATTTCTCCCATTTTGCAAGGCCTGCTGCTATGGTAAGAGCTAATCTTCAGAACATTGGCTTGAAGTCTGGTTTGGCTTCAGCAAGATCAGACAGTATTGAAATTAAGAATAAAGGTGCAGCTGCAACTAGCAGCATTCGTCCTGAATCCATTCTTGTTGATTCAACTGGTGAATGTTCGAAGGAACTGACCATGCACTGTCAGCAGGTTGTGGACCAATCCAAGACTGATTTGAACTCTTTGCCGCAGAAATCTGTTCAACAGAACGGTGTGCCTTCTAAGCAGTCAGAGCCTGCTTGTAAAGAGAGTTCCACCAAGATTGATCAAATTCCCGATCAAGTTCTTGGTGACAGTTGTGCTAAAGGGCAGACAACTACTGAAAAAAGCATGGAGCCAGCAGTAGCCTCTTCCTCTGTTTGCTCTGGCAATGGTGCAGACAGAGTTTCTGATGAGCCAAATCAAAATTTGAAGCGAAAAAGAAAAGACACCGATGAGTCTGAGTGCCATAGTGAACAGACATTTTACATGAAGGATGTTGAAGAAGAATCAGCGGGTGTTAAAAAGGCACCTGGTGGGCGCGGAGGTGCAGGTTCCAAGAGAACCCGTGCAGCTGAAGTGCATAATCTATCTGAAAGGAGGCGAAGAGACAGGATTAACGAGAAGATGCGTGCATTACAAGAACTCATACCAAATTGCAATAAGGTGGATAAAGCGTCAATGCTGGACGAGGCAATTGAGTATCTTAAAACACTTCAGCTCCAAGTTCAAATTATGTCAATGGGAGCTGGTTTATATATGCCACCAATGATGTTACCCGCAGGAATGCAGCACATGCATGCACCACACATGGCTCCATTTTCACCTATGGGTGTTGGCATGCATATGGGATATGGTATGGGTTATGGGATGGGAATGCCTGACATGAATGGTGGACCCTCAAGAATTCCTATGATTCAGGTGCCCCAAATGCAAGGAAGTCATATTCCTGCTGCCCATATGTCCGCACCTACTGCTTTTCATGGGATGGTTAGATCAAATCTTCCAGGGTTTGGGCTTCCTGGACAAGGGCATCCAATGCCAATGCCGCGAGCTCCTGCGTTTCCTTTCTCAGGAGGACCTATCATGAATTCACCAGCTTTGGGACTACATGCCTGTGGATCATCAGGACTTGTTGAAACCGTGGATTCAGCTTCTGCATCTGGCTTAAAGAATCAAATGCCAAATGTTGACCCACAAGTTAAGCAAAACACTGGTGGCCCTGACTCAACAAGTCAGATGCCTACACAGAGTGAAGCAGCTGTTGTTGGATTTGAGCAATCTGCTTTGGTTCCTAGTGGCGTTCGTACCTCTGAGGCTAATGACAAAGTAGCTGTTAATTCTGGTCCCAGCAGATAA 2172 0.4452 MPLYELYRLAREKLGRENNSTRASDQCSSPENDFFELVWENGQISSQGQASRVRTSPSCRSLPSHCLPSHSPKGREKDVGYGANRMGKSRDLDSGLNEISMSVPSREVDFCQDEDVLPWFDYTMDGSLQHDYGSDFLPASTSFTVLDKKSNGNMALRDSHKTSVEQGNVFKASSAEQVETAGPKASTSQLYPPSLHHCQVSSRSRASDITENNNTSNANQDASYGEITRFLSSSSDFCSSKGQTQDPPMPGNGSSSTIMNFSHFARPAAMVRANLQNIGLKSGLASARSDSIEIKNKGAAATSSIRPESILVDSTGECSKELTMHCQQVVDQSKTDLNSLPQKSVQQNGVPSKQSEPACKESSTKIDQIPDQVLGDSCAKGQTTTEKSMEPAVASSSVCSGNGADRVSDEPNQNLKRKRKDTDESECHSEQTFYMKDVEEESAGVKKAPGGRGGAGSKRTRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQIMSMGAGLYMPPMMLPAGMQHMHAPHMAPFSPMGVGMHMGYGMGYGMGMPDMNGGPSRIPMIQVPQMQGSHIPAAHMSAPTAFHGMVRSNLPGFGLPGQGHPMPMPRAPAFPFSGGPIMNSPALGLHACGSSGLVETVDSASASGLKNQMPNVDPQVKQNTGGPDSTSQMPTQSEAAVVGFEQSALVPSGVRTSEANDKVAVNSGPSR 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01812 723 MobiDBLite consensus disorder prediction 174 193 - -
Spst10g01812 723 MobiDBLite consensus disorder prediction 377 409 - -
Spst10g01812 723 MobiDBLite consensus disorder prediction 202 223 - -
Spst10g01812 723 MobiDBLite consensus disorder prediction 46 95 - -
Spst10g01812 723 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 458 521 IPR036638 GO:0046983
Spst10g01812 723 MobiDBLite consensus disorder prediction 660 689 - -
Spst10g01812 723 PANTHER TRANSCRIPTION FACTOR PIF3 1 685 IPR044273 GO:0003700|GO:0006355
Spst10g01812 723 MobiDBLite consensus disorder prediction 341 466 - -
Spst10g01812 723 MobiDBLite consensus disorder prediction 46 65 - -
Spst10g01812 723 MobiDBLite consensus disorder prediction 702 723 - -
Spst10g01812 723 MobiDBLite consensus disorder prediction 341 370 - -
Spst10g01812 723 MobiDBLite consensus disorder prediction 70 84 - -
Spst10g01812 723 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 461 510 IPR011598 GO:0046983
Spst10g01812 723 SMART finulus 467 516 IPR011598 GO:0046983
Spst10g01812 723 CDD bHLH_AtPIF_like 461 523 IPR047265 -
Spst10g01812 723 Pfam Helix-loop-helix DNA-binding domain 465 511 IPR011598 GO:0046983
Spst10g01812 723 Gene3D - 456 519 IPR036638 GO:0046983
Spst10g01812 723 FunFam Basic helix-loop-helix transcription factor 456 519 - -
Spst10g01812 723 MobiDBLite consensus disorder prediction 410 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01812 Spst-Chr10 18476188 18479735 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01812 376 583 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 57.746 7.93e-57 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst10g01812 HLH 7.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01812 K12126 - gmx:100794974 1138.25