Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Spst10g01810 | ATGCCAAAACATTTATGCTCAGATGGTCTAGAGAACATATTGCGTCAAATAAAGATTCTCATTTCTTATTACTTCACAATTGTAGCCATGACTAGGAAGAAAGTGAAACTTGCCTATATCACAGATGTGACGGCAAGGAAATCTACGTACAAGAAACGGAAGAAGGGTATCATTAAGAAGGTGAGTGAACTCACCATTCTTTGTGGTATCCCAGCCTGCGCTATAATCGCAAGTCCTTTTGATGCTAAACCGGAGATTTGGCCAGATCCAAAGGGAGCCAAGCAAGTGATTCAGAGGTATCTGGATGCATCTGTGATAGATGAAAGCAAGAATGTCAACCAAGAGAGTTTCCTAATGCAGAGGATTGCCAAAGCCCAGGAGCAGCTGAAGAAGCTGCGTCAGGAGAACCAAGAGAAGGAGAAGACCTTGTCCATGTTCCAGTACATGCAAGGTGAAGACCTGCCAACTGATGTTGAAGTACTGAAAGAACTCAACAAGCTGATTGAGAAGAATATGAAGGAAAATAAAATCAAGATGGATGAGCTAAATCGTGAGTCTATTTAG | 564 | 0.4184 | MPKHLCSDGLENILRQIKILISYYFTIVAMTRKKVKLAYITDVTARKSTYKKRKKGIIKKVSELTILCGIPACAIIASPFDAKPEIWPDPKGAKQVIQRYLDASVIDESKNVNQESFLMQRIAKAQEQLKKLRQENQEKEKTLSMFQYMQGEDLPTDVEVLKELNKLIEKNMKENKIKMDELNRESI | 187 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Spst10g01810 | 187 | SUPERFAMILY | SRF-like | 30 | 111 | IPR036879 | GO:0003677|GO:0046983 | |
Spst10g01810 | 187 | Gene3D | - | 42 | 125 | IPR036879 | GO:0003677|GO:0046983 | |
Spst10g01810 | 187 | ProSiteProfiles | MADS-box domain profile. | 30 | 78 | IPR002100 | GO:0003677|GO:0046983 | |
Spst10g01810 | 187 | FunFam | Agamous-like MADS-box protein AGL80 | 42 | 126 | - | - | |
Spst10g01810 | 187 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 39 | 79 | IPR002100 | GO:0003677|GO:0046983 | |
Spst10g01810 | 187 | Coils | Coil | 161 | 185 | - | - | |
Spst10g01810 | 187 | PANTHER | MADS BOX PROTEIN | 32 | 179 | - | - | |
Spst10g01810 | 187 | PRINTS | MADS domain signature | 52 | 67 | IPR002100 | GO:0003677|GO:0046983 | |
Spst10g01810 | 187 | PRINTS | MADS domain signature | 32 | 52 | IPR002100 | GO:0003677|GO:0046983 | |
Spst10g01810 | 187 | SMART | madsneu2 | 30 | 89 | IPR002100 | GO:0003677|GO:0046983 | |
Spst10g01810 | 187 | Coils | Coil | 115 | 142 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Spst10g01810 | Spst-Chr10 | 18450206 | 18450871 | Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Spst10g01810 | 30 | 186 | MADS-box Gene Family | AT5G26630 | 45.625 | 1.27e-35 | 122 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MADS-M-type | Spst10g01810 | SRF-TF | 1.3e-13 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Spst10g01810 | - | - | var:108325536 | 260.381 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Spst10g01810 | 10 | 18450206 | 18450871 | Spst10g01810 | 10 | 18450206 | 18450871 | ECH |