Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01810 ATGCCAAAACATTTATGCTCAGATGGTCTAGAGAACATATTGCGTCAAATAAAGATTCTCATTTCTTATTACTTCACAATTGTAGCCATGACTAGGAAGAAAGTGAAACTTGCCTATATCACAGATGTGACGGCAAGGAAATCTACGTACAAGAAACGGAAGAAGGGTATCATTAAGAAGGTGAGTGAACTCACCATTCTTTGTGGTATCCCAGCCTGCGCTATAATCGCAAGTCCTTTTGATGCTAAACCGGAGATTTGGCCAGATCCAAAGGGAGCCAAGCAAGTGATTCAGAGGTATCTGGATGCATCTGTGATAGATGAAAGCAAGAATGTCAACCAAGAGAGTTTCCTAATGCAGAGGATTGCCAAAGCCCAGGAGCAGCTGAAGAAGCTGCGTCAGGAGAACCAAGAGAAGGAGAAGACCTTGTCCATGTTCCAGTACATGCAAGGTGAAGACCTGCCAACTGATGTTGAAGTACTGAAAGAACTCAACAAGCTGATTGAGAAGAATATGAAGGAAAATAAAATCAAGATGGATGAGCTAAATCGTGAGTCTATTTAG 564 0.4184 MPKHLCSDGLENILRQIKILISYYFTIVAMTRKKVKLAYITDVTARKSTYKKRKKGIIKKVSELTILCGIPACAIIASPFDAKPEIWPDPKGAKQVIQRYLDASVIDESKNVNQESFLMQRIAKAQEQLKKLRQENQEKEKTLSMFQYMQGEDLPTDVEVLKELNKLIEKNMKENKIKMDELNRESI 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01810 187 SUPERFAMILY SRF-like 30 111 IPR036879 GO:0003677|GO:0046983
Spst10g01810 187 Gene3D - 42 125 IPR036879 GO:0003677|GO:0046983
Spst10g01810 187 ProSiteProfiles MADS-box domain profile. 30 78 IPR002100 GO:0003677|GO:0046983
Spst10g01810 187 FunFam Agamous-like MADS-box protein AGL80 42 126 - -
Spst10g01810 187 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 39 79 IPR002100 GO:0003677|GO:0046983
Spst10g01810 187 Coils Coil 161 185 - -
Spst10g01810 187 PANTHER MADS BOX PROTEIN 32 179 - -
Spst10g01810 187 PRINTS MADS domain signature 52 67 IPR002100 GO:0003677|GO:0046983
Spst10g01810 187 PRINTS MADS domain signature 32 52 IPR002100 GO:0003677|GO:0046983
Spst10g01810 187 SMART madsneu2 30 89 IPR002100 GO:0003677|GO:0046983
Spst10g01810 187 Coils Coil 115 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01810 Spst-Chr10 18450206 18450871 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01810 30 186 MADS-box Gene Family AT5G26630 45.625 1.27e-35 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Spst10g01810 SRF-TF 1.3e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01810 - - var:108325536 260.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g01810 10 18450206 18450871 Spst10g01810 10 18450206 18450871 ECH