Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01807 ATGGCTAGGAAGAAATTGAAGCTTGCCTTTATCTCTGATGAAATGACAAGGAAAACGACGTACAAGAGAAGGAAGAAGGGCATGATAAAGAAGGTGGATGAACTGGCCACTCTCTGCGGGATCTCAGCTTGTGCTGTAATTTACAATCCTTTTGATTGTGAGACAGAAGTTTGGCCAAATCCAGAAGAAGCCAACAAGGTGATGGAGAGGTTTAAGAATACACCTGTGCTCAACAAAAGCAGGAATGTGAACCACGAAAGCTTCATGATGCAAAGGATCGCCAAGGCCCAAAATGAATTGAAGATGCAACGTGAAGAGAACTATGAGAACCAGATGACCTTGTCCATGTTTCAGTTAATGCAAGGTCAAATCCTGCCACATACCCTTCAAGAAATCACAGAACTCGACAACCTGATTCAGAAGAATATAAATGAGATTCAAAAAAAGTTGGCTGCGCTCAACTTTTAG 468 0.4188 MARKKLKLAFISDEMTRKTTYKRRKKGMIKKVDELATLCGISACAVIYNPFDCETEVWPNPEEANKVMERFKNTPVLNKSRNVNHESFMMQRIAKAQNELKMQREENYENQMTLSMFQLMQGQILPHTLQEITELDNLIQKNINEIQKKLAALNF 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01807 155 FunFam Agamous-like MADS-box protein AGL80 13 97 - -
Spst10g01807 155 SUPERFAMILY SRF-like 1 80 IPR036879 GO:0003677|GO:0046983
Spst10g01807 155 CDD MADS_SRF_like 2 71 IPR033897 GO:0000981|GO:0000987|GO:0045944
Spst10g01807 155 Coils Coil 86 106 - -
Spst10g01807 155 PANTHER MADS BOX PROTEIN 3 150 - -
Spst10g01807 155 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Spst10g01807 155 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Spst10g01807 155 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Spst10g01807 155 Gene3D - 13 116 IPR036879 GO:0003677|GO:0046983
Spst10g01807 155 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Spst10g01807 155 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01807 Spst-Chr10 18432818 18433285 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01807 3 153 Type I MADS-box Gene Family AT1G65300 37.662 1.68e-33 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Spst10g01807 SRF-TF 4.8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01807 - - var:108324686 207.994