Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01790 ATGCCAGCGAGGAAATATTACTGCGACTACTGCGACAAGCAATTCCAAGACACACCAGCCGATCGGAAACGACACGTTCAGGGTATTCAACACCAACAAGCCAAAGCTCGGTGGTACGATTCCTTCAATCAACACCACCAACAGATCCCTAATCCACCCCTTTGCTTTCACTTCCTCAACACGGGATTTTGCCGTTACGCCCACTCTTGCAAGTACCTTCATCCTGTTCCCAACAACGCTATACACCCGTCTCCAATCGTAAGCACACCCTCACCAGGGAATGTGGTAGGAGTATCACTGGGAAATTTACCCCCATCCCTGCAGCCTCCGCCTGAGGCTGGATATCCCCATCTCCCCTTTGTGGATTGGGGATAG 375 0.5147 MPARKYYCDYCDKQFQDTPADRKRHVQGIQHQQAKARWYDSFNQHHQQIPNPPLCFHFLNTGFCRYAHSCKYLHPVPNNAIHPSPIVSTPSPGNVVGVSLGNLPPSLQPPPEAGYPHLPFVDWG 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01790 124 PANTHER NUCLEASE-RELATED 1 124 - -
Spst10g01790 124 SUPERFAMILY beta-beta-alpha zinc fingers 4 48 IPR036236 -
Spst10g01790 124 SUPERFAMILY CCCH zinc finger 49 78 IPR036855 GO:0046872
Spst10g01790 124 SMART c3hfinal6 49 76 IPR000571 GO:0046872
Spst10g01790 124 ProSiteProfiles Zinc finger C3H1-type profile. 49 77 IPR000571 GO:0046872
Spst10g01790 124 Pfam U1 zinc finger 5 39 IPR013085 GO:0008270
Spst10g01790 124 Gene3D Classic Zinc Finger 3 50 - -
Spst10g01790 124 SMART ZnF_U1_5 3 38 IPR003604 GO:0003676|GO:0008270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Spst10g01790 zf-U1 1.8e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01790 K13152 - gmx:100527203 216.853
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g01790 10 18266911 18267510 Spst10g01790 10 18266911 18267510 ECH