Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Spst10g01790 | ATGCCAGCGAGGAAATATTACTGCGACTACTGCGACAAGCAATTCCAAGACACACCAGCCGATCGGAAACGACACGTTCAGGGTATTCAACACCAACAAGCCAAAGCTCGGTGGTACGATTCCTTCAATCAACACCACCAACAGATCCCTAATCCACCCCTTTGCTTTCACTTCCTCAACACGGGATTTTGCCGTTACGCCCACTCTTGCAAGTACCTTCATCCTGTTCCCAACAACGCTATACACCCGTCTCCAATCGTAAGCACACCCTCACCAGGGAATGTGGTAGGAGTATCACTGGGAAATTTACCCCCATCCCTGCAGCCTCCGCCTGAGGCTGGATATCCCCATCTCCCCTTTGTGGATTGGGGATAG | 375 | 0.5147 | MPARKYYCDYCDKQFQDTPADRKRHVQGIQHQQAKARWYDSFNQHHQQIPNPPLCFHFLNTGFCRYAHSCKYLHPVPNNAIHPSPIVSTPSPGNVVGVSLGNLPPSLQPPPEAGYPHLPFVDWG | 124 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Spst10g01790 | 124 | PANTHER | NUCLEASE-RELATED | 1 | 124 | - | - | |
Spst10g01790 | 124 | SUPERFAMILY | beta-beta-alpha zinc fingers | 4 | 48 | IPR036236 | - | |
Spst10g01790 | 124 | SUPERFAMILY | CCCH zinc finger | 49 | 78 | IPR036855 | GO:0046872 | |
Spst10g01790 | 124 | SMART | c3hfinal6 | 49 | 76 | IPR000571 | GO:0046872 | |
Spst10g01790 | 124 | ProSiteProfiles | Zinc finger C3H1-type profile. | 49 | 77 | IPR000571 | GO:0046872 | |
Spst10g01790 | 124 | Pfam | U1 zinc finger | 5 | 39 | IPR013085 | GO:0008270 | |
Spst10g01790 | 124 | Gene3D | Classic Zinc Finger | 3 | 50 | - | - | |
Spst10g01790 | 124 | SMART | ZnF_U1_5 | 3 | 38 | IPR003604 | GO:0003676|GO:0008270 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Spst10g01790 | zf-U1 | 1.8e-10 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Spst10g01790 | K13152 | - | gmx:100527203 | 216.853 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Spst10g01790 | 10 | 18266911 | 18267510 | Spst10g01790 | 10 | 18266911 | 18267510 | ECH |