Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01780 ATGGTGCGCACGCCTAAAACCAAAGGCGCCTCCACCTCCACCTCCAATGCCGCTGCCTTCTTCAAACCGGGCACAGTCGTGGAAGTCAACTCTGACGACGAAGGCTTCCGCGGCTCCTGGTTTTCTGGCACCATCATCCGCCGTCTCGCTTCTGACAGGTTCCTGGTCGAGTATGACAACCTGATGGCGGATGAAAACAGCTCGAAGCCTTTGAGGGAGATCCTAGGTATCCGCCACCTTCGACCTATTCTCCCGTCGGAGACCGGCCAAGTATTCAAATTCGGCGACGAGGTTGATGCGTTCTACAACGATGGGTGGTGGGAGGGCCACATAACGAAGGAATTAGAGGATGACAAATTCGCGGTGTATTTCAGGGCATCCAAAGAGCAATTAGTGTTTCCCAAGGAAAAACTTAGAATCCATCGAGAATGGTTCGATTACAAATGGGTCCCACCATTCCAGCCACAACAACAGGATAATTGTGAATCGAAGAAAGTGTTATTGACACCCAATGTAAAGTCTGATGAAGCTGAGAAAGTGGAGGAGTTAGGCGTAGGAGCGTTAGTTGAAGTTAGCAGTGATGAAGACGGCTTTAGTGGAGCTTGGTTTGCTGCCACTGTTGTTGAGGCAAAGGGACAGGACAAGTTCGTTGTTGAGTACCAGACTCTGTTGGCTGAGGATGATTCTAACCTTTTGAGAGAGGAGATTGATGCCTTGCACATAAGGCCTCATCCGCCCGATACTGGTGCTCATGGTGAATTCAGTCTCCTTGATGAAGTTGATGCCCTGTACAACGACGGTTGGTGGGTCGGTGTTATTTCTAAAGTTCTTGCTGATTCCAAGTATATAGTTTACTTCAGGTCTTCTAATGAGGAACTAGAGTTTCAGCAATCCCATTTAAGGCTGCATCAAGACTGGATTCATGGAAAATGGGTCATGCCTTCTAAGGGCAAGAAAGAAATGGAAAGCAGTACAACATAG 981 0.4832 MVRTPKTKGASTSTSNAAAFFKPGTVVEVNSDDEGFRGSWFSGTIIRRLASDRFLVEYDNLMADENSSKPLREILGIRHLRPILPSETGQVFKFGDEVDAFYNDGWWEGHITKELEDDKFAVYFRASKEQLVFPKEKLRIHREWFDYKWVPPFQPQQQDNCESKKVLLTPNVKSDEAEKVEELGVGALVEVSSDEDGFSGAWFAATVVEAKGQDKFVVEYQTLLAEDDSNLLREEIDALHIRPHPPDTGAHGEFSLLDEVDALYNDGWWVGVISKVLADSKYIVYFRSSNEELEFQQSHLRLHQDWIHGKWVMPSKGKKEMESSTT 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01780 326 Pfam Agenet domain 95 155 IPR008395 -
Spst10g01780 326 Pfam Agenet domain 24 85 IPR008395 -
Spst10g01780 326 Pfam Agenet domain 186 246 IPR008395 -
Spst10g01780 326 CDD Tudor_Agenet_AtDUF_rpt2_4 256 302 - -
Spst10g01780 326 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 173 321 - -
Spst10g01780 326 Gene3D - 169 254 - -
Spst10g01780 326 SMART agenet_At_2 90 146 IPR014002 -
Spst10g01780 326 SMART agenet_At_2 252 308 IPR014002 -
Spst10g01780 326 SMART agenet_At_2 19 88 IPR014002 -
Spst10g01780 326 SMART agenet_At_2 181 249 IPR014002 -
Spst10g01780 326 CDD Tudor_Agenet_AtDUF_rpt2_4 95 140 - -
Spst10g01780 326 CDD Tudor_Agenet_AtDUF_rpt1_3 185 246 - -
Spst10g01780 326 CDD Tudor_Agenet_AtDUF_rpt1_3 21 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01780 Spst-Chr10 18203605 18208748 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01780 193 306 PHD Transcription Factor Family AT5G58610 29.104 3.06e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01780 - - vum:124823040 485.723
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g01780 10 18203605 18208748 Spst10g01780 10 18203605 18208748 ECH