Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01773 ATGGCGTCTTTCGAGCCCAACGTAGATTCAAGTAATTCAGAAACGTCGAGAGAATCCAATCAAAAGAAGCGCAGGAAAATCGGAGACCACGCCACCGATAACAATTCCGCCAACGCCGTCCCTTGGAGATCCGAGGCGGAGCAGCGGATCTACTCCCGCCGCCTCGTCGAGGCTCTCCGCCGGACTCCATCATCGCAGGCCAAACCTAGAGCCGCCGGCCAAGTCCGCGAGACCGCAGACCGAGTCCTCGCTGCAACCGCCAGAGGGCGAACGCGATGGAGCCGCGCGATTCTCGGCCGGTGGAGGAAGCTCCGCACGCAGCATAAGAAGGCGAAGAAGGCATCGTCCACCGGATTGAAGAGAACGAGGATCAGCTGCGGAGAGAGGAGGAACCGGTTAGCGGCTGTGCAGAAGAAAGCGCGCGTTCTCAGCCGGTTGGTTCCCGGTTGCCGGAAGGTCTCGTTCCCGAACCTTCTGGAAGAAGCCACGGATTATATCTCCGCCTTGGAGATGCAAGTGCGAGCCATGACGGCTCTCGCCGAATTACTCTCAGGCGGCGCTCCGGCTGGTCTCGATGGTGGCGCGTTGTGTTGA 594 0.6027 MASFEPNVDSSNSETSRESNQKKRRKIGDHATDNNSANAVPWRSEAEQRIYSRRLVEALRRTPSSQAKPRAAGQVRETADRVLAATARGRTRWSRAILGRWRKLRTQHKKAKKASSTGLKRTRISCGERRNRLAAVQKKARVLSRLVPGCRKVSFPNLLEEATDYISALEMQVRAMTALAELLSGGAPAGLDGGALC 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01773 197 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 120 169 IPR011598 GO:0046983
Spst10g01773 197 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 130 185 IPR036638 GO:0046983
Spst10g01773 197 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 43 183 IPR044660 GO:0006355
Spst10g01773 197 MobiDBLite consensus disorder prediction 1 15 - -
Spst10g01773 197 MobiDBLite consensus disorder prediction 1 41 - -
Spst10g01773 197 CDD bHLH_AtIBH1_like 128 180 IPR044549 GO:0006355
Spst10g01773 197 MobiDBLite consensus disorder prediction 16 31 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01773 Spst-Chr10 18149731 18150324 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01773 1 176 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09250 45.078 3.05e-36 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01773 - - gmx:100783462 300.441
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g01773 10 18149731 18150324 Spst10g01773 10 18149731 18150324 ECH
Spst1g02336 1 31995471 31996025 Spst10g01773 10 18149731 18150324 ECH
Spst1g02336 1 31995471 31996025 Spst10g01773 10 18149731 18150324 PCT