Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01772 ATGCTTCCATCGCCACCCCACTCCAAACTCAAGGGTCTTCTTAATGTTTCCTCCAATGCAAGGGCTGGTGGGTCATACAAAGAACACTGTTCTCCGGGTGATGACTCCCACAGCTTCTATGATAAACTCGTTGAGTTGTTGGAATCTTCTGGACTCACTCTCATTTTCAATGTCCGAGAATCATTGTTGGACTTGTACCTGTTTTACTTGGAGGTGACAAGAAGAGGAGGATATCACCAGGTTGGTCGAGAAAGGAAATGGAGTGAAGTTGTCACGGCCCTGAAATTGGAAGGGAACAATGTGAAATTATGTGCTCAAGTTGAAAGGCTTTACTCACTTCTTATCTACCAGTTTGAGCAATTGTACTTCTACAGGCGTCCTACAAAGCAAGCTGGATCTGGCAGCAACACAAGTCCACTTAGGAAGAAGCGGATTTCAACTGCTAGTTTACCTCATCAGCAGACCACAGAAATGTCCAAGAACTACTCCTGCCAAATGACAGGGGCTGGGTATGTACAACAGCCTGTGCTTTTACCAACACCTTCGAAAGAGAAAAAGACACCTTCGAAAGAAAAGAAGAAACGCCGAGGTGCCCCAGTGGGACAAAAGACTGCATATCAGATATTCCTCAAGCATGAATGTACTCGGTTGAAAACTTGTAATCAGGCCGTAGATGGCAAAATACTAAGCATGGCTATTAATTCATGGAGGACTATGTCTGAAATTGAGAAACAGCCATTTGTGGAGGAAAGCAAGAAGAAGAAAGAAGAAATTAAGGAAGCTATGGTTAGACGCAGTAAACAGCAGAGAACCCATGATACCAGGGAAGAGAAGTCGTCTAGTATGTGTGGTGATTACCCTGTAACTTCGCAACCTGAGGCAGATGACTCCCTTGTCAGCAAAGGAACTGTTGGGTTAGCTCTTAAAATGACTGAAAAAGTACCGAAGGATCCTTCATTTCTAATAGACTGGGATGGTTATTGTCCACTAGATTTCGCAACTAGGGAATCCGAGTAA 1017 0.4395 MLPSPPHSKLKGLLNVSSNARAGGSYKEHCSPGDDSHSFYDKLVELLESSGLTLIFNVRESLLDLYLFYLEVTRRGGYHQVGRERKWSEVVTALKLEGNNVKLCAQVERLYSLLIYQFEQLYFYRRPTKQAGSGSNTSPLRKKRISTASLPHQQTTEMSKNYSCQMTGAGYVQQPVLLPTPSKEKKTPSKEKKKRRGAPVGQKTAYQIFLKHECTRLKTCNQAVDGKILSMAINSWRTMSEIEKQPFVEESKKKKEEIKEAMVRRSKQQRTHDTREEKSSSMCGDYPVTSQPEADDSLVSKGTVGLALKMTEKVPKDPSFLIDWDGYCPLDFATRESE 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01772 338 MobiDBLite consensus disorder prediction 175 202 - -
Spst10g01772 338 Pfam ARID/BRIGHT DNA binding domain 36 119 IPR001606 GO:0003677
Spst10g01772 338 MobiDBLite consensus disorder prediction 263 297 - -
Spst10g01772 338 MobiDBLite consensus disorder prediction 263 280 - -
Spst10g01772 338 SUPERFAMILY HMG-box 186 262 IPR036910 -
Spst10g01772 338 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 35 282 - -
Spst10g01772 338 ProSiteProfiles ARID domain profile. 33 123 IPR001606 GO:0003677
Spst10g01772 338 SMART bright_3 34 124 IPR001606 GO:0003677
Spst10g01772 338 Gene3D - 25 142 IPR036431 GO:0003677
Spst10g01772 338 MobiDBLite consensus disorder prediction 129 159 - -
Spst10g01772 338 Pfam HMG-box domain 201 263 IPR009071 -
Spst10g01772 338 SUPERFAMILY ARID-like 36 126 IPR036431 GO:0003677
Spst10g01772 338 Gene3D High mobility group box domain 197 277 IPR036910 -
Spst10g01772 338 SMART ARID_2 30 119 - -
Spst10g01772 338 MobiDBLite consensus disorder prediction 283 297 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01772 35 263 ARID Transcription Factor Family AT3G13350 24.621 8.07e-11 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Spst10g01772 ARID 1.3e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01772 - - var:108325455 466.463