Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01764 ATGGAAGATTTTTACAAGCTGAACCCTCTTCTGTCTTGTCCTGAGGATGTTGTTAGAGAAGTCAACGTCAACGTTTCCGCTACTGCTGCATCTGAATTGAATCTCGGACTTGTGGCCAATAACTTCCTTCAGCTGGAAGAGCCAGAAAGTTCGAATATGTCGGATCGGTTCATCAAGACCCAGATCGCCACTCACCCTCTTTATCCAAATCTAGTATCTGCTTACATAGAATGCCGAAAGGTTGGAGCACCTCCAGAACTTGCTTCACTTCTTGAAGAAATAGCCCGTGAAAGCCACCCAACAAATGCTCTTCGTGAGATAGGAGATGATCCTGAGCTTGACGAGTTCATGGAGTCATACTGCGAGGTTCTTCATAGATACAAGCAGGAGCTGTCCAAGCCATTCAACGAAGCGACCTTGTTTTTGTGTAGCATTGAATCACAACTCAGCAATCTCTGTAAGGGAACACTGACATTGCCACTGGATAACAACCGCTCAGCGTTCTTGCCAGATGAGGTAGCTGGGACTTCAGAGGATGAATTGAGTTGGGAGAAGATGGAAACAGTGGAAGGTCACGAATCTTCTGGCCCCCGTCCAGGTGATCACGAGCTTAAAGAAATGCTCCTTCGTAAGTATGGTGGTTATCTTAGCAGCTTAAGAAAGGAATTTTTGAAGAAAAGAAAAAAGGGTAAGCTTCCTAAGGATGCAAGGATGATACTCATGAACTGGTGGAGCACCCACTATAGGTGGCCTTATCCTACGGAGGAGGAGAAAGTGCAACTATCAGAAATGACTGGACTTGATCAAAAGCAGATAAATAATTGGTTCATCAATCAAAGGAAACGACATTGGAAACCATCTGAAGACATGCGATTTGCCATTATGGATGGTGTAAGTGGCAGCGCCATTGGAGGAGGGCCTATGTAA 927 0.4509 MEDFYKLNPLLSCPEDVVREVNVNVSATAASELNLGLVANNFLQLEEPESSNMSDRFIKTQIATHPLYPNLVSAYIECRKVGAPPELASLLEEIARESHPTNALREIGDDPELDEFMESYCEVLHRYKQELSKPFNEATLFLCSIESQLSNLCKGTLTLPLDNNRSAFLPDEVAGTSEDELSWEKMETVEGHESSGPRPGDHELKEMLLRKYGGYLSSLRKEFLKKRKKGKLPKDARMILMNWWSTHYRWPYPTEEEKVQLSEMTGLDQKQINNWFINQRKRHWKPSEDMRFAIMDGVSGSAIGGGPM 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01764 308 Pfam KNOX1 domain 58 99 IPR005540 GO:0003677|GO:0005634
Spst10g01764 308 CDD homeodomain 235 287 IPR001356 GO:0003677
Spst10g01764 308 SUPERFAMILY Homeodomain-like 225 298 IPR009057 -
Spst10g01764 308 SMART KNOX2_2 103 154 IPR005541 GO:0003677|GO:0005634
Spst10g01764 308 ProSitePatterns 'Homeobox' domain signature. 261 284 IPR017970 GO:0000981|GO:0006355
Spst10g01764 308 SMART HOX_1 225 290 IPR001356 GO:0003677
Spst10g01764 308 ProSiteProfiles 'Homeobox' domain profile. 223 286 IPR001356 GO:0003677
Spst10g01764 308 Gene3D - 221 293 - -
Spst10g01764 308 Pfam ELK domain 203 224 IPR005539 GO:0003677
Spst10g01764 308 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 60 293 - -
Spst10g01764 308 SMART KNOX1_2 56 100 IPR005540 GO:0003677|GO:0005634
Spst10g01764 308 ProSiteProfiles ELK domain profile. 203 223 IPR005539 GO:0003677
Spst10g01764 308 Pfam Homeobox KN domain 243 282 IPR008422 GO:0003677|GO:0006355
Spst10g01764 308 Pfam KNOX2 domain 107 153 IPR005541 GO:0003677|GO:0005634
Spst10g01764 308 SMART ELK_2 203 224 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01764 Spst-Chr10 18016742 18020179 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01764 52 301 Homeobox Transcription Factor Family AT1G23380 53.282 1.39e-83 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Spst10g01764 KNOX2 9.6e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01764 - - gmx:102660463 536.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g01764 10 18016742 18020179 Spst10g01764 10 18016742 18020179 ECH
Spst1g02329 1 31939174 31942637 Spst10g01764 10 18016742 18020179 PCT