Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01740 ATGGCAGCGGCATTTACATCTGCAACCACATTCAGACTGTCAAACGTTGGAGAAATCAAAGGTTTGAACCTCCGTAACCCTAATCCTAATTACCTGAAGCTTAGGACGCGGGGGTTTGGGTTTGGCGGTTGTGGTGGAGTGGCAGTGAGTGTGAGAGAAGGGAAAGTTGGAAGGAGTTTGACGGTTCGGGCGACTTCTTCTTCTTCGGGGGAGGATGCAAATGTTCAGGCGAAAGTGACTCAGAAAGTGTTCCTTGACATCGGTATTGGAAATCCAGTTGGGAAGCTTGTGGGACGGATTGTGATTGGACTGTACGGCGACGATGTTCCCCAAACAGCTGAGAACTTCCGCGCCCTCTGCACTGGAGAGAAGGGCTTCGGCTATAAGGGCTCTACCTTCCATCGTGTCATCAAGGATTTCATGATTCAAGGAGGCGATTTTGACAAAGGAAATGGAACTGGAGGCAAAAGTATATATGGTCGCACTTTCAAAGATGAAAATTTTAATTTGTCTCATACTGGACCCGGAGTTGTTAGCATGGCAAATGCAGGTCCCAACACGAATGGGAGTCAGTTTTTCATATGCACTGTCAAGACACCATGGTTGGATCAGAGGCATGTTGTATTTGGCCAAGTTTTGGAAGGCATGGACATTGTTAGGTTGATCGAATCTCAGGAGACAGATAGGGGTGACCGTCCTAGAAAAAAGGTGACCATCAGCGACTGTGGTGAGCTTCCAATTGCTTGA 747 0.4766 MAAAFTSATTFRLSNVGEIKGLNLRNPNPNYLKLRTRGFGFGGCGGVAVSVREGKVGRSLTVRATSSSSGEDANVQAKVTQKVFLDIGIGNPVGKLVGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFNLSHTGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVRLIESQETDRGDRPRKKVTISDCGELPIA 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01740 248 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 176 191 IPR002130 GO:0000413|GO:0003755
Spst10g01740 248 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 104 119 IPR002130 GO:0000413|GO:0003755
Spst10g01740 248 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 133 145 IPR002130 GO:0000413|GO:0003755
Spst10g01740 248 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 204 219 IPR002130 GO:0000413|GO:0003755
Spst10g01740 248 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 191 203 IPR002130 GO:0000413|GO:0003755
Spst10g01740 248 Gene3D - 67 247 IPR029000 -
Spst10g01740 248 SUPERFAMILY Cyclophilin-like 78 245 IPR029000 -
Spst10g01740 248 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 82 245 - -
Spst10g01740 248 FunFam Peptidyl-prolyl cis-trans isomerase 69 248 - -
Spst10g01740 248 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 128 145 IPR020892 GO:0003755|GO:0006457
Spst10g01740 248 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 94 244 IPR002130 GO:0000413|GO:0003755
Spst10g01740 248 CDD cyclophilin_ABH_like 82 243 - -
Spst10g01740 248 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 98 243 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01740 Spst-Chr10 17827848 17830423 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01740 98 239 U-box Gene Family AT5G67530 48.252 2.25e-34 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01740 K03768 - gmx:100777088 404.831