Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01727 ATGTATCCCTCCTCCTCCTCCTCTTCCTCCTCCTCTCACTCCCTCACCCACGCCGGAACAGGCCTCACGCGCTACGGCTCCGCTCCGGGCTCTCTCCTCACCACCACCGTCGATGCACTCATCGGGGGATCACGCCCCACACCCACCCCTTACTATTCCGGAGGAGACTCCTCCGACTCAACCTGCAAAGACCAAACATCGTATCACAACCACGCCTTAGGATCCGCCTTGCTCCGTCAGAAAAGCTCTCCCGCCGGCTTCCTCTCCCATCTCGCCTCCACCACCACCACCACCACCACCACCACCACCACCAATCACAACCACAACCACAACCACAATGCAGCGGGGTTCACCATCACACGGGGTTCTCGGTTGAAGTCCCAGTTGAGCTTCACGGGTCACTGCCAAGACTCTCTTTGTGGCGCCGATAACACTAACAATGTGGTACTTGCTGATCATACCACCTTCGGAATCGAGCCCTGGGACAGTTCTCATTCTCATTCTCATTCTCACTCCAATTCCATCGCCTTTTCCGCTCCCCCAGCCAAGCGCTCCAAAAATACCAACTCCGACGATCAGGACATTCTCCATTGCCTCAATGCCTTGGAATCTCAGTTTAGTCTTCCACAAACCTCTCTCGAAATGGCAACGGTTGAGAAGCTCTTGCACATTCCCGAAGACTCCGTCCCTTGTAAAATCCGTGCTAAGCGAGGCTGTGCTACTCATCCCCGCAGCATTGCCGAGCGGGAGAGAAGAACCAGAATAAGTGGAAAGCTCAAGAAATTACAGGACCTTGTACCGAATATGGATAAGCAAACAAGCTATGCAGACATGCTCGATCTGGCCGTTCAACATATTAAAGGTCTTCAAACTCAGGTTCAGAAAACTCGACATCATAAGAGAAACTTCGTTTTAAACCTGATCTTACACAACCACAAACTCTCTTCGCCCAAAAAATTTGACTAG 966 0.5228 MYPSSSSSSSSSHSLTHAGTGLTRYGSAPGSLLTTTVDALIGGSRPTPTPYYSGGDSSDSTCKDQTSYHNHALGSALLRQKSSPAGFLSHLASTTTTTTTTTTTNHNHNHNHNAAGFTITRGSRLKSQLSFTGHCQDSLCGADNTNNVVLADHTTFGIEPWDSSHSHSHSHSNSIAFSAPPAKRSKNTNSDDQDILHCLNALESQFSLPQTSLEMATVEKLLHIPEDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQDLVPNMDKQTSYADMLDLAVQHIKGLQTQVQKTRHHKRNFVLNLILHNHKLSSPKKFD 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01727 321 Gene3D - 236 303 IPR036638 GO:0046983
Spst10g01727 321 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 242 299 IPR036638 GO:0046983
Spst10g01727 321 SMART finulus 245 295 IPR011598 GO:0046983
Spst10g01727 321 CDD bHLH_AtbHLH_like 244 297 IPR045239 -
Spst10g01727 321 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 239 289 IPR011598 GO:0046983
Spst10g01727 321 MobiDBLite consensus disorder prediction 50 65 - -
Spst10g01727 321 MobiDBLite consensus disorder prediction 162 191 - -
Spst10g01727 321 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 36 295 - -
Spst10g01727 321 MobiDBLite consensus disorder prediction 162 186 - -
Spst10g01727 321 MobiDBLite consensus disorder prediction 40 65 - -
Spst10g01727 321 FunFam Transcription factor bHLH130 family 240 306 - -
Spst10g01727 321 Pfam Helix-loop-helix DNA-binding domain 244 290 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01727 Spst-Chr10 17685845 17692100 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01727 77 302 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G05805 50.420 6.20e-61 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst10g01727 HLH 4.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01727 - - vra:106771988 495.352
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g01727 10 17685845 17692100 Spst10g01727 10 17685845 17692100 ECH
Spst1g03338 1 41998832 42001273 Spst10g01727 10 17685845 17692100 ECH
Spst7g00278 7 2134637 2137260 Spst10g01727 10 17685845 17692100 ECH