Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Spst10g01722 | ATGGATCATCGCAAGAGGGGGAGGTCTGAAGCTGCCTTCAATGTCAATGGCGCCGCCAAGAAATTCAGGCCAGAAACGGACTCCGTTCCAACTGGTTTAGGAAGCAAATCGAAGCCATGCACAAAGTTTTTCAGATGTGCAATTATTCAGACTAGTCTTCCAAAGGTCACCTCTGGTTGTCCATTTGGTGAAGGATGTCATTTCCTGCATTATGTTCCTGGTGGCTTCAAAGCAGTCTCTCAGCTGATCAATGTTGGTAGCAATCCCGCCATTCCCCATGTTGGAAGAAATTCAGTTCCACCATCCTTCCCAGATGGGTCTTCTCCCCCAGTTGTTAAAACCCGATTATGCAACAAGTTTAATACGGCTGAGGGTTGCAAATTTGGTGACAAATGTCACTTTGCCCATGGCGAGTGGGAGCTTGGCAGGCCCACTGCTCCATCATATGAAGATCCCCGTGTTATGGGACAAATGCCAAGCAGCAGGATAGGTGGACGTAGCGAGCCGCCACTTGCTGCCAGCTTTGGAGCTTCAGCCACTGCAAAAATTAGTATCAATGCTTCACTAGCTGGAGCAGTCATTGGAAAAAGTGGTGCTAATTCAAAGCAAATTTGTCGTGTAACAGGAGCTAAACTTGCCATAAGGGATCATGACACGGATTCTAACCTTAGAAACATCGAGCTTGAAGGCAGTCTTGATCAGATCAAACAAGCAAGTGCCATGGTACACGAACTTATTTTAAATCTTAGTTCTGCATCTGGGCCTCCAATGAAAGGCTTTACTACACAGACTTCTGCTCCGTCAGGCAACTTCAAGACCAAGCTCTGCGAAAACTTTGCTAAGGGTTCCTGCACTTTTGGGGACAGGTGTCACTTCGCACATGGAACTGATGATTTGCGCAAGACTGGAATCTGA | 915 | 0.4699 | MDHRKRGRSEAAFNVNGAAKKFRPETDSVPTGLGSKSKPCTKFFRCAIIQTSLPKVTSGCPFGEGCHFLHYVPGGFKAVSQLINVGSNPAIPHVGRNSVPPSFPDGSSPPVVKTRLCNKFNTAEGCKFGDKCHFAHGEWELGRPTAPSYEDPRVMGQMPSSRIGGRSEPPLAASFGASATAKISINASLAGAVIGKSGANSKQICRVTGAKLAIRDHDTDSNLRNIELEGSLDQIKQASAMVHELILNLSSASGPPMKGFTTQTSAPSGNFKTKLCENFAKGSCTFGDRCHFAHGTDDLRKTGI | 304 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Spst10g01722 | 304 | SUPERFAMILY | Eukaryotic type KH-domain (KH-domain type I) | 167 | 248 | IPR036612 | GO:0003723 | |
Spst10g01722 | 304 | SMART | kh_6 | 177 | 247 | IPR004087 | GO:0003676 | |
Spst10g01722 | 304 | ProSiteProfiles | Zinc finger C3H1-type profile. | 112 | 139 | IPR000571 | GO:0046872 | |
Spst10g01722 | 304 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 113 | 138 | IPR000571 | GO:0046872 | |
Spst10g01722 | 304 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 271 | 295 | IPR000571 | GO:0046872 | |
Spst10g01722 | 304 | CDD | KH-I_AtC3H36_like | 181 | 246 | - | - | |
Spst10g01722 | 304 | SUPERFAMILY | CCCH zinc finger | 270 | 300 | IPR036855 | GO:0046872 | |
Spst10g01722 | 304 | Gene3D | K Homology domain, type 1 | 174 | 267 | IPR036612 | GO:0003723 | |
Spst10g01722 | 304 | ProSiteProfiles | Zinc finger C3H1-type profile. | 34 | 73 | IPR000571 | GO:0046872 | |
Spst10g01722 | 304 | PANTHER | CCCH ZINC FINGER/TIS11-RELATED | 19 | 164 | IPR045877 | GO:0003729 | |
Spst10g01722 | 304 | SMART | c3hfinal6 | 113 | 138 | IPR000571 | GO:0046872 | |
Spst10g01722 | 304 | SMART | c3hfinal6 | 270 | 296 | IPR000571 | GO:0046872 | |
Spst10g01722 | 304 | FunFam | Zinc finger CCCH domain-containing protein | 265 | 301 | - | - | |
Spst10g01722 | 304 | SUPERFAMILY | CCCH zinc finger | 109 | 142 | IPR036855 | GO:0046872 | |
Spst10g01722 | 304 | ProSiteProfiles | Type-1 KH domain profile. | 178 | 242 | - | - | |
Spst10g01722 | 304 | Gene3D | - | 268 | 302 | - | - | |
Spst10g01722 | 304 | Gene3D | - | 106 | 143 | - | - | |
Spst10g01722 | 304 | Pfam | KH domain | 181 | 243 | IPR004088 | GO:0003723 | |
Spst10g01722 | 304 | ProSiteProfiles | Zinc finger C3H1-type profile. | 270 | 297 | IPR000571 | GO:0046872 | |
Spst10g01722 | 304 | FunFam | Zinc finger CCCH domain-containing protein | 106 | 143 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Spst10g01722 | Spst-Chr10 | 17632343 | 17637813 | Transposed |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Spst10g01722 | KH_1 | 1.1e-10 | CL0007 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Spst10g01722 | - | - | gmx:100818781 | 535.798 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Spst10g01722 | 10 | 17632343 | 17637813 | Spst10g01722 | 10 | 17632343 | 17637813 | ECH |