Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01722 ATGGATCATCGCAAGAGGGGGAGGTCTGAAGCTGCCTTCAATGTCAATGGCGCCGCCAAGAAATTCAGGCCAGAAACGGACTCCGTTCCAACTGGTTTAGGAAGCAAATCGAAGCCATGCACAAAGTTTTTCAGATGTGCAATTATTCAGACTAGTCTTCCAAAGGTCACCTCTGGTTGTCCATTTGGTGAAGGATGTCATTTCCTGCATTATGTTCCTGGTGGCTTCAAAGCAGTCTCTCAGCTGATCAATGTTGGTAGCAATCCCGCCATTCCCCATGTTGGAAGAAATTCAGTTCCACCATCCTTCCCAGATGGGTCTTCTCCCCCAGTTGTTAAAACCCGATTATGCAACAAGTTTAATACGGCTGAGGGTTGCAAATTTGGTGACAAATGTCACTTTGCCCATGGCGAGTGGGAGCTTGGCAGGCCCACTGCTCCATCATATGAAGATCCCCGTGTTATGGGACAAATGCCAAGCAGCAGGATAGGTGGACGTAGCGAGCCGCCACTTGCTGCCAGCTTTGGAGCTTCAGCCACTGCAAAAATTAGTATCAATGCTTCACTAGCTGGAGCAGTCATTGGAAAAAGTGGTGCTAATTCAAAGCAAATTTGTCGTGTAACAGGAGCTAAACTTGCCATAAGGGATCATGACACGGATTCTAACCTTAGAAACATCGAGCTTGAAGGCAGTCTTGATCAGATCAAACAAGCAAGTGCCATGGTACACGAACTTATTTTAAATCTTAGTTCTGCATCTGGGCCTCCAATGAAAGGCTTTACTACACAGACTTCTGCTCCGTCAGGCAACTTCAAGACCAAGCTCTGCGAAAACTTTGCTAAGGGTTCCTGCACTTTTGGGGACAGGTGTCACTTCGCACATGGAACTGATGATTTGCGCAAGACTGGAATCTGA 915 0.4699 MDHRKRGRSEAAFNVNGAAKKFRPETDSVPTGLGSKSKPCTKFFRCAIIQTSLPKVTSGCPFGEGCHFLHYVPGGFKAVSQLINVGSNPAIPHVGRNSVPPSFPDGSSPPVVKTRLCNKFNTAEGCKFGDKCHFAHGEWELGRPTAPSYEDPRVMGQMPSSRIGGRSEPPLAASFGASATAKISINASLAGAVIGKSGANSKQICRVTGAKLAIRDHDTDSNLRNIELEGSLDQIKQASAMVHELILNLSSASGPPMKGFTTQTSAPSGNFKTKLCENFAKGSCTFGDRCHFAHGTDDLRKTGI 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01722 304 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 167 248 IPR036612 GO:0003723
Spst10g01722 304 SMART kh_6 177 247 IPR004087 GO:0003676
Spst10g01722 304 ProSiteProfiles Zinc finger C3H1-type profile. 112 139 IPR000571 GO:0046872
Spst10g01722 304 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 113 138 IPR000571 GO:0046872
Spst10g01722 304 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 271 295 IPR000571 GO:0046872
Spst10g01722 304 CDD KH-I_AtC3H36_like 181 246 - -
Spst10g01722 304 SUPERFAMILY CCCH zinc finger 270 300 IPR036855 GO:0046872
Spst10g01722 304 Gene3D K Homology domain, type 1 174 267 IPR036612 GO:0003723
Spst10g01722 304 ProSiteProfiles Zinc finger C3H1-type profile. 34 73 IPR000571 GO:0046872
Spst10g01722 304 PANTHER CCCH ZINC FINGER/TIS11-RELATED 19 164 IPR045877 GO:0003729
Spst10g01722 304 SMART c3hfinal6 113 138 IPR000571 GO:0046872
Spst10g01722 304 SMART c3hfinal6 270 296 IPR000571 GO:0046872
Spst10g01722 304 FunFam Zinc finger CCCH domain-containing protein 265 301 - -
Spst10g01722 304 SUPERFAMILY CCCH zinc finger 109 142 IPR036855 GO:0046872
Spst10g01722 304 ProSiteProfiles Type-1 KH domain profile. 178 242 - -
Spst10g01722 304 Gene3D - 268 302 - -
Spst10g01722 304 Gene3D - 106 143 - -
Spst10g01722 304 Pfam KH domain 181 243 IPR004088 GO:0003723
Spst10g01722 304 ProSiteProfiles Zinc finger C3H1-type profile. 270 297 IPR000571 GO:0046872
Spst10g01722 304 FunFam Zinc finger CCCH domain-containing protein 106 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01722 Spst-Chr10 17632343 17637813 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Spst10g01722 KH_1 1.1e-10 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01722 - - gmx:100818781 535.798
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g01722 10 17632343 17637813 Spst10g01722 10 17632343 17637813 ECH