Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01720 ATGACAGACAGAAGTAAGGGAAGCTATTCACATTGTGGCGAGATCAATTTTGCAGCAATGGACGATGCGAAACGCCCCATGCATGAAGAGAATAACGCTGCAGGGTCGTTGTTGCAGAAGTTCAAAGGCGTTGTGCCTCAACAAAACGGGAACTGGGGTGCACAGATATATGCAAACCACCAGAGAATCTGGTTAGGGACTTTCAAATCCGAAAGAGAGGCTGCAATGGCTTATGACAGCGCCAGTATAAAACTCAGAAACGGAGAGAGCCACAGAAACTTTCCATGGAACGATCAAACGGTGCTGGAGCCTGAGTTTCAAAGCCATCACAGCGCAGAAACAGTGGTGAACATGATTAGAGATGGCACCTACCCATCACACTTTGCTACATTTCTCAGCACTCGTCAAACCCATCAAAGTGTTGTTGCCAGGCAGGTAAATTTGAATGGTCATCGTGATAAGGAGCAGTTTTGTTGCACCCAGCTTTTCCAAAAAGAGTTGACACCAAGTGATGTGGGAAAGCTCAACAGGCTTGTCATCCCCAAAAAGCATGCAGTTACCTATTTTCCTTACGTGTGTGGCAGTGCAGAAGCGCATGAAGAAAATGGGAGTGTTGACATGGAGGTTGTGTTTTATGACAGGCTCATGAGATTGTGGAAATTTCGATACTGCTATTGGAAGAGCAGCCAAAGTTACGTGTTCACAAGAGGGTGGAATCGGTTTGTGAAGGACAAGAACCTAAAGGCTAAGGATACCATTGCGTTTTTCATGTGTGAAGCTATGGATAAGAGAAAAGAGGGTGACGGAGAAGCTTTTGGATTGATTGATGTAATTTATAATTCAGAGGAGAGAAGAAAGTATTTTGAAGAGAGCAAGGAAGATGCCAAACATGTTTTTGAAAATGAGTTGGTTTGCAGCGAGGAAGACGAAGACACCAAACATGAAAACATTGGAAAGGATTTGAATGCCAAAAAGGGTTTGAGGCTATTTGGTGTTTTGATCTCTTGA 1008 0.4385 MTDRSKGSYSHCGEINFAAMDDAKRPMHEENNAAGSLLQKFKGVVPQQNGNWGAQIYANHQRIWLGTFKSEREAAMAYDSASIKLRNGESHRNFPWNDQTVLEPEFQSHHSAETVVNMIRDGTYPSHFATFLSTRQTHQSVVARQVNLNGHRDKEQFCCTQLFQKELTPSDVGKLNRLVIPKKHAVTYFPYVCGSAEAHEENGSVDMEVVFYDRLMRLWKFRYCYWKSSQSYVFTRGWNRFVKDKNLKAKDTIAFFMCEAMDKRKEGDGEAFGLIDVIYNSEERRKYFEESKEDAKHVFENELVCSEEDEDTKHENIGKDLNAKKGLRLFGVLIS 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01720 335 FunFam AP2 domain-containing protein RAP2.8 39 96 - -
Spst10g01720 335 Pfam AP2 domain 40 87 IPR001471 GO:0003700|GO:0006355
Spst10g01720 335 SUPERFAMILY DNA-binding pseudobarrel domain 161 261 IPR015300 -
Spst10g01720 335 Pfam B3 DNA binding domain 163 257 IPR003340 GO:0003677
Spst10g01720 335 SUPERFAMILY DNA-binding domain 40 97 IPR016177 GO:0003677
Spst10g01720 335 Gene3D - 159 271 IPR015300 -
Spst10g01720 335 CDD B3_DNA 162 257 IPR003340 GO:0003677
Spst10g01720 335 SMART B3_2 163 266 IPR003340 GO:0003677
Spst10g01720 335 SMART rav1_2 40 101 IPR001471 GO:0003700|GO:0006355
Spst10g01720 335 ProSiteProfiles AP2/ERF domain profile. 40 95 IPR001471 GO:0003700|GO:0006355
Spst10g01720 335 CDD AP2 39 97 IPR001471 GO:0003700|GO:0006355
Spst10g01720 335 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 39 332 IPR044800 GO:0003700
Spst10g01720 335 Gene3D AP2/ERF domain 39 96 IPR036955 GO:0003700|GO:0006355
Spst10g01720 335 ProSiteProfiles B3 DNA-binding domain profile. 163 281 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01720 Spst-Chr10 17623201 17624208 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01720 33 334 RAV Transcription Factor Family AT1G50680 53.067 1.53e-102 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Spst10g01720 B3 1.6e-23 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01720 K09287 - gmx:102660503 452.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g01720 10 17623201 17624208 Spst10g01720 10 17623201 17624208 ECH