Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01712 ATGGTTTTTTTCAGCTATACAGAGGGAAGGCCAGTTGATTCTTTTCGTGTGTCTAACTTTGGTCAACCAGTTGGATATGGCAAAGAGGATTCTGTTCCCTTGAGTGGAAACTCAATTTTTGACTCATTTAAAGTAAGTGGCCAAACAATTTCTCGAGGTCCTGTTCAACTCAGTTCCTTTGATAAGTTGCCAACTTCACTTGATAAAAGCCCATTTTCGAACCAAACAGAGCAACAAAGTTTGCAATTACAAAGGGTTCACTCCTCTAATCTGGTCACTGGTGATACAGAGCACCAGGAAGAGTCTGCCATGGCTGATGCTAGTCCTAGAACTGATATTTCTACAGATGCAGACACTGAAGATAAGAATCCACAGTTTGATAGAAGTCAGGCCCTTGTAGCAGCAGCTTCTGATTCTAGTGACAGATCAAAGGATAAAACAGATCAGAAGACTCTCCGCAGGCTTGCTCAGAATCGTGAGGCTGCAAGAAAAAGCCGACTGAAAAAGAAAGCTTATGTTCAACAGCTGGAAAGTAGTCGTTTAAAGTTGACTCAATTGGAGCAAGAGCTTCAGCGAGCTAGGCAGCAGGGAATATTTATATCAGGTTCAAGTGATCAAGCGCATTCAATGACCGGAAATGGGGCTATGGCATTTGATGTAGAATATGCAAGGTGGCTGGAAGAGCACAATCGACAAATTAATGAGCTAAGAGCAGCTGTAAATTCTCACGCAGGTGATACAGAACTTTGCATGATTATTGATGGTGTTATGGCACATTATGATGAGATATTTAAGCTGAAGGGCAATGCAGCTAAGGCTGATGTCTTCCATTTGTTGTCTGGCATGTGGAAAACACCAGCAGAGAGGTGTTTCCTATGGCTTGGTGGTTTTCGCTCATCTGAACTACTGAAGCTCCTGATAAATCAGTTGGAACCTCTTACGGAGCAGCAGTTAGCGGGTATCACCAACTTGCAGCAATCTTCCCAACAGGCAGAAGATGCATTGTCTCAGGGCATGGAAGCATTGCAGCAGTCCCTTTCTGAGACATTATCCACAGGATCACTTGGCACCTCTGGTTCATCAGGGAATGTGGCAAATTACATGGGTCAAATGGCTATGGCCATGGGTAAATTAGGGACACTTGAGGGGTTCATTAAACAGGCTGACAATTTGCGCCAGCAAACACTGCAACAAATTCATCGCATATTGACAACTCGGCAATCGGCACGTGCACTGCTTGCCATACATGACTACTTTTCTAGGCTGCGTGCTCTTAGCTCTCTTTGGCTTGCCCGCCCCAGAGACTGA 1308 0.445 MVFFSYTEGRPVDSFRVSNFGQPVGYGKEDSVPLSGNSIFDSFKVSGQTISRGPVQLSSFDKLPTSLDKSPFSNQTEQQSLQLQRVHSSNLVTGDTEHQEESAMADASPRTDISTDADTEDKNPQFDRSQALVAAASDSSDRSKDKTDQKTLRRLAQNREAARKSRLKKKAYVQQLESSRLKLTQLEQELQRARQQGIFISGSSDQAHSMTGNGAMAFDVEYARWLEEHNRQINELRAAVNSHAGDTELCMIIDGVMAHYDEIFKLKGNAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLINQLEPLTEQQLAGITNLQQSSQQAEDALSQGMEALQQSLSETLSTGSLGTSGSSGNVANYMGQMAMAMGKLGTLEGFIKQADNLRQQTLQQIHRILTTRQSARALLAIHDYFSRLRALSSLWLARPRD 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01712 435 Coils Coil 169 196 - -
Spst10g01712 435 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 148 192 IPR004827 GO:0003700|GO:0006355
Spst10g01712 435 Coils Coil 226 246 - -
Spst10g01712 435 Pfam Seed dormancy control 232 307 IPR025422 GO:0006351|GO:0043565
Spst10g01712 435 Pfam Basic region leucine zipper 146 192 IPR004827 GO:0003700|GO:0006355
Spst10g01712 435 PANTHER TRANSCRIPTION FACTOR TGA9 86 434 - -
Spst10g01712 435 CDD bZIP_HBP1b-like 150 202 - -
Spst10g01712 435 SMART brlzneu 146 209 IPR004827 GO:0003700|GO:0006355
Spst10g01712 435 ProSiteProfiles DOG1 domain profile. 215 432 IPR025422 GO:0006351|GO:0043565
Spst10g01712 435 SUPERFAMILY Leucine zipper domain 150 193 IPR046347 GO:0003700|GO:0006355
Spst10g01712 435 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 153 168 IPR004827 GO:0003700|GO:0006355
Spst10g01712 435 Gene3D - 149 199 - -
Spst10g01712 435 MobiDBLite consensus disorder prediction 93 152 - -
Spst10g01712 435 FunFam BZIP family transcription factor 149 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01712 Spst-Chr10 17576326 17582673 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01712 104 435 bZIP Transcription Factor Family AT3G12250 78.313 0.0 520
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Spst10g01712 DOG1 4.8e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01712 K14431 - gmx:100816123 684.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g01712 10 17576326 17582673 Spst10g01712 10 17576326 17582673 ECH