Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01684 ATGGCAACATCTTCAGCAGAATCAGTAATTGGAGTAATTGATGGGAAATTTGAAAGTGGGTACATAGTTTCTGTGACAATGGGCTCAGAGACACTGAAAGGCATACTTTATGAAGTGCCACAGCACCCAGTGTTGCCAACATCCCATCACAGTGTTTCTGCTTCATTGGGTGTTCATCATCCACGGCACAGTAAGAAATCAGAAATGAAAAAGAGAGTTCCTGCACATCCAAAACATAGTAGAAGTGGGTACAATTTCTTCTTTGCTGAACAACATGCAACACTCAAGACACTTCACCAAGGAAAAGAGGGAGAGATTCCTAGGATGATTGGTGAACTCTGGTCAAAGTTAAAAGTGTCTCAAAAGATGATTTATCAAGAGATGGCTGTGAAAGACAAGGAAAGGTACATGCTAGAAATGGATGATTATTTGGAGAAATTAAGAATAGGCCATGTGATCACTGATGCTGTGCCACTTCAACAATGGCCTCCTAAACTGGCCACAAACATGTTGGATGCTGACATGAATTTGGATGATGTTGAGAAAAATGAAACCAGTTCAAGTGGAAAAGGTTTTGTAGATCATAATAAAGCTGCAGATAGAGGTTTTGATATGAATGCAGTGCCTGATATGGGAAGGAGAGAAGAGAGATGCAAAGATTTTGTGGTGCATGATCATAGCATAAATTTTGATGTTCATGTTCAAATTGATAAATGGTTTTTGCATGGAAAACTTGTTGGAAAAATCATGTGGTGCCTCATGGCGTCTGTTATTCCTCGATGCTTTTCCCAAATTACAATCCTAACTTCAACTCAAAACCCACGAAAAACGCATGTGGTTAAATCAAGCCTTAGCCACCAAAATGACAGCTCTTCTTCCCCTCACACCGACCACTCCTCAAAGGAACTCCAAGTAACAGTTTCCAGGCGTAGTTGTCTTTCTTGTTTGTGCTCAACTCTAGTCTTGATTGGTGATTATGCTGCACCTATTTTTGTTCCTAAGGCAACTGCTGTGGATGGAATGATGGAAAAACCTGTGTGCAGAAATTGTTTGGGAAGTGGTGCTGTGCTTTGTGACATGTGTGGTGGTACAGGAAAATGGAAAGCTCTAAACAGGAAGCGAGCTAAAGATGTTTATGAATTTACTGAGTGTCCAAATTGTTATGGTCGAGGAAAACTTGTCTGCCCTGTTTGTCTAGGAACTGGTTTGCCAAACAATAAAGGTCTTCTAAGGCGGCCCGATGCACGGAAACTGCTTGATAAGATGTATAATGGAAGGTTACTTCCAAACTCTTAG 1296 0.4082 MATSSAESVIGVIDGKFESGYIVSVTMGSETLKGILYEVPQHPVLPTSHHSVSASLGVHHPRHSKKSEMKKRVPAHPKHSRSGYNFFFAEQHATLKTLHQGKEGEIPRMIGELWSKLKVSQKMIYQEMAVKDKERYMLEMDDYLEKLRIGHVITDAVPLQQWPPKLATNMLDADMNLDDVEKNETSSSGKGFVDHNKAADRGFDMNAVPDMGRREERCKDFVVHDHSINFDVHVQIDKWFLHGKLVGKIMWCLMASVIPRCFSQITILTSTQNPRKTHVVKSSLSHQNDSSSSPHTDHSSKELQVTVSRRSCLSCLCSTLVLIGDYAAPIFVPKATAVDGMMEKPVCRNCLGSGAVLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARKLLDKMYNGRLLPNS 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01684 431 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 3 185 - -
Spst10g01684 431 SMART hmgende2 76 145 IPR009071 -
Spst10g01684 431 MobiDBLite consensus disorder prediction 59 78 - -
Spst10g01684 431 Pfam HMG (high mobility group) box 77 143 IPR009071 -
Spst10g01684 431 SUPERFAMILY HMG-box 63 148 IPR036910 -
Spst10g01684 431 CDD HMG-box_AtHMGB9-like 77 143 - -
Spst10g01684 431 Gene3D High mobility group box domain 62 151 IPR036910 -
Spst10g01684 431 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 346 403 IPR036410 -
Spst10g01684 431 MobiDBLite consensus disorder prediction 278 300 - -
Spst10g01684 431 MobiDBLite consensus disorder prediction 51 79 - -
Spst10g01684 431 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 77 144 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01684 Spst-Chr10 17256549 17261249 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01684 5 175 ARID Transcription Factor Family AT1G04880 52.660 3.29e-49 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Spst10g01684 HMG_box 3.9e-12 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01684 - - vun:114190120 298.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g01684 10 17256549 17261249 Spst10g01684 10 17256549 17261249 ECH