Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01660 ATGTCATCTCGCATTGTTGCGGACAATTCATTACCGCTCACCAATGCCACCACGCCTTATTTTGACTTAATGGAAGTCGACCACCTCACGCGCCGCCCCGTCTCCGTCGAGATGCCCACCCTCGGACAGCTCCTCAAGAACGTCGGAGATGTCAGGAAGGAAGCCACCGGCGACGGAAGCGAGACGCCGGTGCATCACGCCCTCGATATAGTCGACGCCCCTGGAATTGAGCCTCGCTCGCTGCCCTTCGTCCTCTCCTTCAGCAACCTCACTTATAGAGTCAAGGTGCGCCGCAAAATCAGTCTCTCCTCGATGTTCCCCCGCCGTGGCAGCCACCACCACGGCGCGTCCGCGGTGGCGGAGGGTCCTGCTGTTGGTGAGAACATGTTCAGGCGGACGAAGACGCTGCTGAACGACATCTCCGGCGAGGCGCGGGACGGGGAGATCATGGCGGTCCTTGGCGCCAGCGGTTCTGGAAAGTCGACACTAATCGACGCGCTGGCGAACCGAATCGCCAAAGGAAGTCTGAAAGGCACTGTGGCGCTGAACGGCGAAACGCTGGAATCGAGTCTTCTGAAGGTGATTTCAGCGTACGTGATGCAAGACGACCTACTCTTCCCCATGCTCACTGTGGAAGAGACTCTGATGTTTGCGGCGGAGTTTCGACTACCGCGCACGCTCTCCAAGTCAAAGAAAAACGCTCGCGTGCAGGCTCTCATCGACCAGCTAGGTCTTCGGAACGCAGCGAAAACAGTCATCGGAGACGAAGGCCACCGCGGAGTCTCCGGCGGCGAGCGTCGGAGAGTTTCCATCGGCATCGATATTATCCACGACCCGATCCTGCTGTTCCTGGACGAGCCAACCTCGGGACTTGACTCCACGAGCGCGTTCTTAGTGGTGAAGGTTTTGCAGAGAATCGCACAGAGCGGAAGCATCGTAATCATGTCCATTCACCAACCGAGTTACCGAATCCTGGGGCTTCTGGACCGCATGATCTTCTTATCGCGCGGGCAAACCGTTTACAGCGGTTCACCGTCGCAGTTGCCGGTTTTCTTCTCCGAGTTCGGTCATCCAATTCCGGAAACCGATAACAGAACGGAGTTCGCGTTGGACCTGATTCGCGAACTGGAAGGTTCACCCGGCGGAACGAAGAGCTTGGTGGAATTCAACAAGTCGTGGCAGAGCATGACGAAGCACAATCAAACGACGACGGAGGAGGAACGAAACGGCTTGTCGTTGAAGGAAGCAATAAGCGCTAGCATTTCGCGGGGGAAGCTAGTTTCAGGCGCCACCAACACCAACCCGAACCCGTCGTCTATGGTGCCAACTTTTGCCAATCCGTTTTGGGTTGAGATGGCGACGCTGTCGAAACGGTCGTTTTTGAATTCGAGAAGAATGCCGGGGTTGTTTGGGATTAGATTGGGTGCGGTGATGGTGACGGGGTTCATTCTTGCCACCATGTTTTGGCAACTCGATGACTCTCCCAAAGGAGTGCAAGAGAGGCTCGGATTCTTCGCCTTCGCCATGTCAACCACTTTCTACACCACCGCCGACGCGCTTCCCGTGTTCCTCCAAGAACGCTACATTTTCATGAGGGAAACTGCTTACAACGCATATCGTAGATTCTCGTATTTGGTCTCGCATGCGCTCGTTTCGTTGCCAGCACTAGCGTTCCTCTCGTTGGCTTTCGCGGCGACCACGTTTTGGGCCGTGGGCCTGGATGGCGGAGCTTCGGGCTTTTTGTTTTATTTCCTGATTATTTTTGCTTCGTTTTGGGCCGGGAATTCATTCGTGACGTTCCTTTCGGGTGTGGTGCCTCACGTGATGCTGGGTTACACTATCGTGGTTGCGATTCTGGCCTATTTCTTGCTCTTCAGTGGATTCTTCATCAACAGGGACAGGATTCCCAGTTACTGGATTTGGTTCCACTACTTGTCGTTGGTGAAATACCCCTACGAAGCTGTTTTGCAGAACGAGTTCGATGACCCCGTTAAGTGCTTCGTCAGGGGGGTCCAGATCTTCGACAACACCCCTCTTGGCTCGCTCCCTCACTCTCTCAAGTTGAAGCTTTTGGACAGCATGAGCAACACCCTCGGTATGAACATCACCAGCTCCACCTGTTTGACCACCGGTTCCGACATTTTGCAGCAGAACGGTGTGACCGACTTGACCAAGTGGAACTGCTTCTGGATCACAGTCGCTTGGGGATTCTTCTTTAGATTCCTCTTCTACTTCTCCCTCTTGCTCGGAAGCAAGAACAAGAGGACCTGA 2271 0.5478 MSSRIVADNSLPLTNATTPYFDLMEVDHLTRRPVSVEMPTLGQLLKNVGDVRKEATGDGSETPVHHALDIVDAPGIEPRSLPFVLSFSNLTYRVKVRRKISLSSMFPRRGSHHHGASAVAEGPAVGENMFRRTKTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKGSLKGTVALNGETLESSLLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKNARVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFLVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPSQLPVFFSEFGHPIPETDNRTEFALDLIRELEGSPGGTKSLVEFNKSWQSMTKHNQTTTEEERNGLSLKEAISASISRGKLVSGATNTNPNPSSMVPTFANPFWVEMATLSKRSFLNSRRMPGLFGIRLGAVMVTGFILATMFWQLDDSPKGVQERLGFFAFAMSTTFYTTADALPVFLQERYIFMRETAYNAYRRFSYLVSHALVSLPALAFLSLAFAATTFWAVGLDGGASGFLFYFLIIFASFWAGNSFVTFLSGVVPHVMLGYTIVVAILAYFLLFSGFFINRDRIPSYWIWFHYLSLVKYPYEAVLQNEFDDPVKCFVRGVQIFDNTPLGSLPHSLKLKLLDSMSNTLGMNITSSTCLTTGSDILQQNGVTDLTKWNCFWITVAWGFFFRFLFYFSLLLGSKNKRT 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01660 756 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 66 742 - -
Spst10g01660 756 ProSitePatterns ABC transporters family signature. 261 275 IPR017871 GO:0005524|GO:0016887
Spst10g01660 756 Gene3D - 128 350 IPR027417 -
Spst10g01660 756 SMART AAA_5 146 338 IPR003593 GO:0016887
Spst10g01660 756 Pfam ABC-2 type transporter 454 660 IPR013525 GO:0016020|GO:0140359
Spst10g01660 756 Pfam ABC transporter 137 289 IPR003439 GO:0005524
Spst10g01660 756 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 120 361 IPR003439 GO:0005524
Spst10g01660 756 FunFam ABC transporter G family member 6 126 352 - -
Spst10g01660 756 Pfam ABC-2 type transporter 318 393 IPR043926 GO:0140359
Spst10g01660 756 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 132 348 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01660 Spst-Chr10 17055545 17057815 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01660 136 348 Calmodulin-binding Proteins AT2G36910 29.091 6.14e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01660 K05681 - gmx:100803658 1300.03