Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01645 ATGGCGGGGATTCAGATGCTACCATACGGCGACGTCGATTCCAAATTGAGGGACATGGCCGGCCGCGCCGAGGGTTTCGGCCGCCACGCAATCGGCGGCCTCCACGGTTCTCTCTATCTCGTCACCACACTCGCAGATGATGGTCCTGGGTCCCTTCGTGAGGGATGTCGTAGAGTTGAACCGTTATGGATTGTTTTTGAGGTTTCTGGCACGATTCATTTGTCGTCGTTCCTGAGTGTGTCATCGTATAAGACAATAGATGGGAGAGGACAGAGGGTGAAGTTGACTGGGAAGGGTTTGAGACTGAAGGAATGTGAGCACATCATCGTGTGCAACCTTGAGTTTGAGGGTGGTAGGGGTCATGATGTTGATGGTATTCAAATCAAACCAAATTCTAGGCATATATGGATCGATCGATGCAGCCTTCGTGATTACGACGATGGCCTTATAGACATTACAAGACAAAGCACAGACATCACCGTGTCTAGGTGTTGCTTTGGGCAGCATGACAAGACCATGCTCATTGGAGCTGACCCGACTCACGTTGGTGATAGATGCATCCGGGTGACCATTCACCACTGTTTCTTTGATGGAACACGCCAAAGACAACCTCGTGTGAGATTTGGAAAAGTTCATCTGTACAACAATTACACCAGAAACTGGGGCATATATGCTGTTTGTGCTAGTGTGGAATCCCAGATATACTCTCAATGTAACATATATGAAGCGGGAACTAAGAAAAAGACCTTTGAATTTTATTCCGAGAAGGCGGCAGATAAGGAAGAGCAAAAGTCTGGCTTCATAGTATCCGAAGGAGACATGTTTCTGAATGGTGCTCAGCCATGCTTGCTTACAGAAAACAAAGAAGTGTCCATGTTCCATCCTAGCGAATATTACCCAACATGGACAATGGAACCTGCTGCACATTCTCTCAGAGAGGTCCTCCAATTGTGTGCAGGTTGGCAATCCATTTGTAGGCCAGTAGATCGAATGGTTCCTAATTAA 1005 0.4726 MAGIQMLPYGDVDSKLRDMAGRAEGFGRHAIGGLHGSLYLVTTLADDGPGSLREGCRRVEPLWIVFEVSGTIHLSSFLSVSSYKTIDGRGQRVKLTGKGLRLKECEHIIVCNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCCFGQHDKTMLIGADPTHVGDRCIRVTIHHCFFDGTRQRQPRVRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGTKKKTFEFYSEKAADKEEQKSGFIVSEGDMFLNGAQPCLLTENKEVSMFHPSEYYPTWTMEPAAHSLREVLQLCAGWQSICRPVDRMVPN 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01645 334 Gene3D - 9 320 IPR012334 -
Spst10g01645 334 PRINTS Pollen allergen Amb family signature 22 39 IPR018082 -
Spst10g01645 334 PRINTS Pollen allergen Amb family signature 202 221 IPR018082 -
Spst10g01645 334 PRINTS Pollen allergen Amb family signature 224 243 IPR018082 -
Spst10g01645 334 SMART amb_all 69 247 IPR002022 -
Spst10g01645 334 PANTHER PECTATE LYASE 18-RELATED 12 288 IPR045032 GO:0030570
Spst10g01645 334 SUPERFAMILY Pectin lyase-like 20 329 IPR011050 -
Spst10g01645 334 Pfam Pectate lyase 78 240 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01645 Spst-Chr10 16945123 16947710 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01645 44 334 Polysaccharide Lyase AT3G55140 80.412 0.0 511
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01645 K01728 - gmx:100802068 649.818